Genomic Location: chr6:74173891...74199145
NR annotation: CAH3016199.1, unnamed protein product [Porites evermanni]
Species Montipora capricornis · all data for this species · gene families
| CDS |
| LOC138054543 |
| Transcript |
| rna-XM_068901051.1 |
| Protein |
| XP_068757152.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002766 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15295 all species → | CCDC50_N | Coiled-coil domain-containing protein 50 N-terminus | Coiled-coil | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029311 all species → | Domain | Coiled-coil domain-containing protein 50, N-terminal | Interproscan |
| IPR039303 all species → | Family | Coiled-coil domain-containing protein 50 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22115 all species → | C3ORF6 PROTEIN-RELATED | Interproscan |
XP_068757152.1. This gene does have a gene model — the search simply returned no hit.XP_068757152.1.Transcript abundance of XP_068757152.1 across 36 RNA-seq samples of Montipora capricornis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Polyps | 36 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM,
StringTie quantification over 36 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
