Gene detail

Detailed information of XP_068757253.1 in Montipora capricornis

Genomic Location: chr6:11726663...11735040
NR annotation: XP_029183084.2, mucin-5AC-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138054660

ATGCGAAATTTTTTTCATAAGTTGGAACTGCGTCGCTTCCTCGTTCTGCTTGTGTTTGTATTATTTACTGAAGGGAAAAAGCATTTTAAGCACATCAAAGACCACGATGTTTCATCAAACCAAAAGAAGGAAATTAAATCCACGTTTATTACAATAAGAATACCTGAACATAGTGCGACACACAAGAAAGATTGTCTTTACGAAGGAAAACTGCATCGTCATGGTGACGCGTGGTCCCCAGGACCCTGCATTCCCGAGTGCCGATGCAAGAGTGGTCACGTGAAATGTTCCAAAATAGAATGCCCGGATTTAAATTGTGAAAGGCCTACAAAGAGGAAGTGGAAATGCTGCCCGGAATGTTCACCAGAAACGCAAGATGGATATTCCTGTGGCGTTTGGACGAAAGGTGGAAATGGCAATGGAGGATGCTGCACTTTTCCGTTCAACTATCATGGAGTTAATTACTTTACCTGCACTTATCAAGACCATGACAATCCGTGGTGCGCGCTGACAAGTGATTTCGACCGAGACAGAATCTGGGGAGATTGTATTGATAAAGGAGATTCATTAAAAGCTTTACGTTTTAAGAAGAAGAATGGACGAAAAAATACCGAAGAATATCCCCTTGAAACTATGGAAAACATTACCAATAAGGCCGTCCTCAATGCCATGAAGGGGATAGTGGAGCAGCAAAATGCTTCAACACCTGAGTCAGGTGCTACAAAGGCCGCCGGTAATACGACAACACCTTTGCCAGCGAGTTCACTGGTCGCGCCTGCTATAGCACCTACAAATGAAAGCACTGGCATCCAACCTCTTGCTCCAAAAACCCCTGTTTTGGCGTCTACGGCATCAAACGAGACGATGTCTGCTAATTCTGTTGGTATTCAACCATCTGGTCCCATACTCCCTTTGAATGCTAGTTCCATTGGTGTTTTACCATCACCCGTACCAACTCCTGCATCAAGTGCTGTTGTTCCCGGACAATCTACGACTGCCGCTGTTCCAGCACAATTTCCTTTCCCTGTTGCTGGTATTCCAACTCAAACTTCTAGTACGGTGGCTCCGATTCCAGCCGCGTCCCCGGTTGCCAGTGTTCCTGCACAACCTCCTAATACCATTGCTCCTGCACAAGCTCCTTTCCCTGTTGCTGGCCTTCCTGCGCAAACGGCTGCTCCAGTGGCTCCGATCCCAGCCGCGTCCCCGCTTGCTGGGGTTCCTGCACAACCTCCCAATACTGTTACTCCTGCACAAGCTCCTTCACCTGTTGCTGGTGTATCTGCACAATCTCCAATGCCAGTTCCTTCTCCTGTCACTGGTACTTCTGTGCCTTCAAGAGCCCCAGGTGCTCCTGCTGTGGTGATTTCTCAGGCAAGTAACGTGGTAATAAATCCAAGCCCAGGGGCGTCGGTCGCGGTAGGTGCTCCTTCTCAGCCGCCAGTCGTTTCTGGACAGCCTGCAGCACCAGGACAGCAAGTAGTTGAGAAGCCTCCATACCCCTCGATTACCTACCCAGCTGGTGCCACTCCGCCTTTAGCGCCTCAGCCTGCACCACAGACACCCCAAGGTGCGCAGCCAAGCCAACAGCCAACAATTGTTAAGCCCGGAGAGACCCAGGTCCCAGGTCAGGCACCCGGTCAACCAAACCAACAGCCATTTCCGATATCTCAGACCATTATTAGCCCCGAAGCGACCCAGGTTCCCGGTCAAGTACCTGGCCAGGCTGTTCACGAAGTTACTACGACAGAGATTAATCCAAACCACAATATTACGACAACGGAGTCCTGGTTGGGCAAAGCCAACGAGACGCTAAACAGAACCAATGAGGTGGCAAACCAAACGGGAAACCAGACATACGATAACGATTACCAAGGTAATAATTATTATTACCCGACGTACGAAAACTCCAGCCCGACGCAGGCTCCTTACTACACTGATCAGCAAGGCTATTCAAGGCAAGGAGACACATATGCGACGGATAACTCTCCGGGCTATGACACCGCTAGCCAACAATATTGGGCAACGCTAGCCCAGAATACCAACGGGCAGGAGGGTTATTATTCGAGCGAGCAAGAGTTCCAAAATGCTGCAGAGCAAGGAAGGTCTTATTACGTTTGA

Transcript

rna-XM_068901152.1

CCTAAAAATGCgaaatttttttcataagttgGAACTGCGTCGCTTCCTCGTTCTGCTTGTGTTTGTATTATTTACTGAAGGGAAAAAGCATTTTAAGCACATCAAAGACCACGATGTTTCATCAAACCAAAAGAAGGAAATTAAATCCACGTTTATTACAATAAGAATACCTGAACATAGTGCGACACACAAGAAAGATTGTCTTTACGAAGGAAAACTGCATCGTCATGGTGACGCGTGGTCCCCAGGACCCTGCATTCCCGAGTGCCGATGCAAGAGTGGTCACGTGAAATGTTCCAAAATAGAATGCCCGGATTTAAATTGTGAAAGGCCTACAAAGAGGAAGTGGAAATGCTGCCCGGAATGTTCACCAGAAACGCAAGATGGATATTCCTGTGGCGTTTGGACGAAAGGTGGAAATGGCAATGGAGGATGCTGCACTTTTCCGTTCAACTATCATGGAGTTAATTACTTTACCTGCACTTATCAAGACCATGACAATCCGTGGTGCGCGCTGACAAGTGATTTCGACCGAGACAGAATCTGGGGAGATTGTATTGATAAAGGAGATTCATTAAAAGCTTTACGTTTTAAGAAGAAGAATGGACGAAAAAATACCGAAGAATATCCCCTTGAAACTATGGAAAACATTACCAATAAGGCCGTCCTCAATGCCATGAAGGGGATAGTGGAGCAGCAAAATGCTTCAACACCTGAGTCAGGTGCTACAAAGGCCGCCGGTAATACGACAACACCTTTGCCAGCGAGTTCACTGGTCGCGCCTGCTATAGCACCTACAAATGAAAGCACTGGCATCCAACCTCTTGCTCCAAAAACCCCTGTTTTGGCGTCTACGGCATCAAACGAGACGATGTCTGCTAATTCTGTTGGTATTCAACCATCTGGTCCCATACTCCCTTTGAATGCTAGTTCCATTGGTGTTTTACCATCACCCGTACCAACTCCTGCATCAAGTGCTGTTGTTCCCGGACAATCTACGACTGCCGCTGTTCCAGCACAATTTCCTTTCCCTGTTGCTGGTATTCCAACTCAAACTTCTAGTACGGTGGCTCCGATTCCAGCCGCGTCCCCGGTTGCCAGTGTTCCTGCACAACCTCCTAATACCATTGCTCCTGCACAAGCTCCTTTCCCTGTTGCTGGCCTTCCTGCGCAAACGGCTGCTCCAGTGGCTCCGATCCCAGCCGCGTCCCCGCTTGCTGGGGTTCCTGCACAACCTCCCAATACTGTTACTCCTGCACAAGCTCCTTCACCTGTTGCTGGTGTATCTGCACAATCTCCAATGCCAGTTCCTTCTCCTGTCACTGGTACTTCTGTGCCTTCAAGAGCCCCAGGTGCTCCTGCTGTGGTGATTTCTCAGGCAAGTAACGTGGTAATAAATCCAAGCCCAGGGGCGTCGGTCGCGGTAGGTGCTCCTTCTCAGCCGCCAGTCGTTTCTGGACAGCCTGCAGCACCAGGACAGCAAGTAGTTGAGAAGCCTCCATACCCCTCGATTACCTACCCAGCTGGTGCCACTCCGCCTTTAGCGCCTCAGCCTGCACCACAGACACCCCAAGGTGCGCAGCCAAGCCAACAGCCAACAATTGTTAAGCCCGGAGAGACCCAGGTCCCAGGTCAGGCACCCGGTCAACCAAACCAACAGCCATTTCCGATATCTCAGACCATTATTAGCCCCGAAGCGACCCAGGTTCCCGGTCAAGTACCTGGCCAGGCTGTTCACGAAGTTACTACGACAGAGATTAATCCAAACCACAATATTACGACAACGGAGTCCTGGTTGGGCAAAGCCAACGAGACGCTAAACAGAACCAATGaGGTGGCAAACCAAACGGGAAACCAGACATACGATAACGATTACCaaggtaataattattattacccgACGTACGAAAACTCCAGCCCGACGCAGGCTCCTTACTACACTGATCAGCAAGGCTATTCAAGGCAAGGAGACACATATGCGACGGATAACTCTCCGGGCTATGACACCGCTAGCCAACAATATTGGGCAACGCTAGCCCAGAATACCAACGGGCAGGAGGGTTATTATTCGAGCGAGCAAGAGTTCCAAAATGCTGCAGAGCAAGGAAGGTCTTATTACGTTTGACGGGCTTGGTCATGCCATTTGTCTCCAGATCGGAacaaacatattttatttctgTCGGACTATGCTTCACGGGGACAAATAAATAGGAAACTGACTGGAAGTATTCAACGATTTCCATAAAATCCTCTTGTACTCGACCATTTTATACTGGCCGCGTCCTGTGAAAAATTCCTTCTCATTGCTACTTGGTCGTCGTAAAGTCATACAAATGCAGGGAACTGTGATAAATGTTACTGATAACCAGGATTTACGATAAATTGTGTACGCGTCACCATGTGTCACACCTTTTACCCTCGCCCTGTTGGGCTCTGGACACAATTTGTGACGTAGATACAAAATACcataaatgtttttttgcaaTTATTACATTGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P41246	Matrix metalloproteinase-9 OS=Oryctolagus cuniculus OX=9986 GN=MMP9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010095 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00040 all species →	fn2	Fibronectin type II domain	Domain	Interproscan
PF00093 all species →	VWC	von Willebrand factor type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000562 all species →	Domain	Fibronectin type II domain	Interproscan
IPR001007 all species →	Domain	VWFC domain	Interproscan
IPR036943 all species →	Homologous_superfamily	Fibronectin type II domain superfamily	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan
IPR045717 all species →	Family	Chordin-like protein 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46303 all species →	VWFC DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0030514 all species →	Biological Process	negative regulation of BMP signaling pathway	Interproscan
GO:0036122 all species →	Molecular Function	BMP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068757253.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068757253.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

14TPM > 0

1Conditions

0.7Max TPM

0.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	14	0.10	0.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	0.69
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	0.51
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	0.50
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	0.36
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.33
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.30
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.25
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.16
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.11
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	0.07
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.07
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.05
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	0.05
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	0.04
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.00
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.00
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.00
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.00
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.00
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.00
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.00
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	0.00
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	0.00
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	0.00
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.