Gene detail

Detailed information of XP_068757330.1 in Montipora capricornis

Genomic Location: chr7:17364800...17398517
NR annotation: XP_029190217.1, S-adenosylhomocysteine hydrolase-like protein 1 isoform X2 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068901229.1

TGATGAGTTATATAAAAGGACATTGCAACTTCGATGAGTAATGAAATATACATGATGCCGGTAGGGCTTCGTCGAATCGACCTTTGTTGAACGAAATCACTTCATCATGTCGGATTCTATGTGGAATAGGAAAAACTCTTTCGCCATCAGCTCTTACTCGGCGAAGACTCCTAAACCAGAGCCTGAATCTAATACTCCAAGTAGAAAATATATTCGTCCGCAGTATTCTCATCGTTCGTTGTCGAGGAGTAGTTCAATCGACAGTTCAGCCAGCTATTCAGACAGTTACTCGTCGGACGAAGACGATGTATCTCCCAGGGAAAGATCTCAGAAAAACAGCAGTGGTGGATCCGATTTTTGTGTTAAGAATATTAAGCTGGCTGACTTTGGTCGCAGGGAAATTGAAATAGCTGAACAAGAAATGCCTGGTCTAATGCTTCTCAGAAAGCGGAATTGCACTGACAAGCCGTTAGAAGGAGCCAAAATTGTTGGTTGCACTCATGTTACTGCGCAGGCCGCAGTTTTAATAGAGACACTAACAGCTCTTGGGGCACAAGTTCGATGGAGTGCTTGTAACATTTACTCAACACAGAATGAAGTTGCAGCGGCTTTGGCTGAAGCAGGTTACCCCATCTTTGCTTGGAAGGGGGAGTCTGAGGAAGATTTCTGGTGGTGCATAGAACAGTGCATTACATCAGATAAGTGGCAGCCTAATATGGTGTTGGATGACGGAGGTGATGCCACTCACCTAATGTACAAGAAATTCAATGGAACCTTCAATACTCTGAAAGGTGTTGTGGAGGAAAGTGTGACTGGTGTGCACAGATTATACCAGCTTTCAAAGCAAGGCAAGTTAACGGTGGCAGCCATGAATGTCAATGACTCTGTAACCAAAACTAAGTTTGATAACATGTATTGCTGTAGAGAATCAATCTTGGATAGTTTGAAGAGAACTACAGATGTAATGTTTGGAGGAAAACAGGTTCTTGTTTGTGGCTATGGTGAGGTAGGCAAGGGATGTTGTTCTGCTCTCAAAGGTCTTGGTGCCATAGTGTATGTTGCAGAAATTGATCCCATTTGTGCTCTGCAGGCATGTATGGATGGTTTTCGAGTAGTCAAGATTGACTTGGTTGTGAAACAAATTGACATCTTAATCACCTGCACAGGCAACAAACATGTTGTTACAAGAGAACATCTAGACAGAATGAAGAATGGATGCATTGTGTGTAACATGGGACACTCCAATACTGAAGTTGATGTGGCTAGTTTGAGGACATCAGATCTGACGTGGGAGAAGGTCAGAACACAAGTAGATCATATTATCTGGCCAGATGGCAAGAGAATTGTGCTGTTAGCAGAGGGTCGTCTTGTCAATCTGAGTTGCTCTAGTGTTCCTTCATTTGTAGTTTCCATTACGTCCACAACACAGGCAATAGCATTAATTGAACTTTACAAGGCTCCACCTGGTAGATACAAGCATGATGTCTATCTTTTGCCAAAAAAGATGGATGAATATGTGGCAATGTTGCACTTGCCTACATTTGATGGCCACTTGACTGAGCTTACAGAGGAGCAAGCAAAGTATCTTGGCGTTAACAAGAATGGCCCATTTAAGCCCAATTATTACAGaTACTAGTGGCAATGGACTGGAATCCACAGAAGCCACAGCGAATGCTTGTAAATTCTGgaacatttttaaaatcactATTTATGAAAAAAGTGTAGTTTTTGCAACTTTTATTGGCCATCACAAGAATCTCCTTCGCACCATCTTTAGCTAGTGGTGTCATATAATTTTATGACGTATGGTAAAATGATTAGAATTATTAAAATAatggcttttcttttaaatgaagCTTATTGGTGTATAGTTTTCCCGTTTCTATCTTCAACTGCAAGTTGGATAAACTGGTGCAGCAGTACTCCCTGACTTGTTTTCTCATTGCTGTAATAGAATGGTAGAGTCCTGTCTGAGTAGTTCAAGTTAGACTCCACCAAAAAAGTGGAGGCAATATTTGTTTGCACTGTGTCTTTTGTTGTCCTTTACTTACATTGTATCAAAAAAAAGGAGCAACCAGGATCACTTTTGAGACTTTGCAAAAAATCTGGTTAGTCAAATTGAGCACCTTGGGGTGATTTGTGTACATGAACTctgcaacatggtggccaagTTCATTGATTTAACAATACCTAGGCTGGTCCTACATAGAGTCATTTTGTCCACACTTTAACCCATTCCGGCCAGGGGTCAACGAGTTAATGAGGGAGAAGATGGCTAAAATTGGTATGGGATCGATTGAGGTTACACAAGTTTGGTTCTGAGGTATACAGCAGTGGtagagtttgtttttgttctcgaTAGTGTAATCTGGCTAATGAAGAAAACCCAGATCCCTCTGTCACTAGCAAAATAATTGCAGACTGCCAAATGGAATGATGTCCCAGTTAAAATGTTTTATTGCATCAACTACATGTATGATAATCTCAGTGTTGCATCCCACATGACTGCAAATCTTTTGTATTGAGAGCAGAGAGGGTgttgagtttttgaaaaaaaaattatttgttacCATTAGTTGAAATCCAAGGTTACACCATGGTTATGTTTTAAGTTTCATTACTGCAGTTACCAGTCACCGGTGCCCCTCAATggcttcttttttcattttttgaaacTAAATTTGGTTGGACGTCAATCActtgtttccatgacaatagtccTGCTCATTTGGTGGCAgttgaattcgtcatggaaacatttgattgacatccacccaaatttagtttcgaaaaatgaaaaaaaagccgtTGAGGGGCACCTGTGACTGATAACCACAAGGGTGTCAAACTAAGAAAGAGAACCATCTTAAAAGAATGAATGTTGTAAGGCTTTGGCCACTAATTGTAGTCAGGCAGTTTGCACAAGGataaaagaataatttacaggttgccatttttgcattcagtTTATTCAGCAGTTTAGTGCAGAATTGCAGGAGGCCATTTGCAAGGCAGATCTCAAGTCTCATGGTTTTGCCTTGAGACTCACAGTTTTTAGGGCAATCTCATGGTCTTACGATGAGGCACAAAAATCTCATGGTTAACAGATTTAGAGTCCGATGGAATACACTTTccttgaatattatttttcatttctgcCTCGTAAAATTGATTTTCTGGCACCAATTCTGTAGAGATCCGTAGGTCTAAAGAATATTTGTCGTATTTGATTGACTGGTTGACAAGACACGGACCTCACAACAGAAGACAAATGCCAAATAAAGTTATCTTTACTGGTTTGTCGCATCTAGATATGTTTCGTCCAGTTTGTCAAAATGGAGGAAAACTATgataaacagaaacaaaacttTTTAATGAACTGCCTCCCTGTTTCAAAGGAAATTCCTTTGGACTTGTGAATCTCCTGCTGGAAAATATTGAAACTGGcacataataatataattataaccATAATTTTTGAAGGTTTAGCAATAATAATTGACTGTAATGGATAATGGAATACTGTGGaaggaataataatatttattatttagaaCAAGGCACATGCTTGACTTACGAAAAAGCAGCAAGAGATCAATCCTAGTTAATTATTgacaatttatttcatttctggTCCTTGGTGACAACAAAAAGTACAAAATCAAATGATAGAAATGATAATGTATTTTACAGTTATTTTTGtccaatgattttttttggtaTGAAATTGTTATTACTATAAAGATTTCCTTCTTTAATATTTCCAAGGGAGTTTTCCTTGGGTTTTCAGTGTGGACAAAAGACCATGTTCACTTTTCGGGCAATCTCTTTGTTTCCCTCAAATAGATGTGATCCAGTCTATCTTGCAAATGGTACCTTTTACTTTGCTGTATCCAATCCTACTAAATTCTTGTGGTTTTACGGCTGAAGTCTAAGGAACTTTTTTCCTCGTTAAATTTTTCCTGTAATACTATGTCTAATGTGTTGTTTGGCCATCTTAGCATGAAACGAGTACCGGTGACTTGTTGctctaaataataatttttgtcaACTCCTAATAGCATTATTTGTTTTACGTAGTTGGAGGGGCTCTGTTATGGTAGGTTTAgtgttttttaaatgaaaactgGGTAAAATGCACACAGACAGCATTCCTGTCAACCCATTGAAATAATCACTCAAAGTTGCCCATGAAAATAATAAGTTAATGCATTGCGAGAACCCAGACTACCCAATAAAAGGAAGACTAGCCCTTTATTCTGGGAGCTGTTTTTTCAATAGCCTGGTGTAATGAACTTGTTTCAGTAACTATTAATATGACCATGTACTGTATTAATCAACACTTTTAAAGTAGCTTTCCAAAATGACAATATTGTGCGGGTAGTGTCCAATGTTTTAATGAAGTTGTAATTTAATAAAAATGGAAACAGCTGCTaccacaaaatgaaataaagaaatttgactttttttcaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R889	Putative adenosylhomocysteinase 3 OS=Pongo abelii OX=9601 GN=AHCYL2 PE=2 SV=1
Q96HN2	Adenosylhomocysteinase 3 OS=Homo sapiens OX=9606 GN=AHCYL2 PE=1 SV=1
Q68FL4	Putative adenosylhomocysteinase 3 OS=Mus musculus OX=10090 GN=Ahcyl2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001273 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00670 all species →	AdoHcyase_NAD	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	Domain	Interproscan
PF05221 all species →	AdoHcyase	S-adenosyl-L-homocysteine hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000043 all species →	Family	Adenosylhomocysteinase-like	Interproscan
IPR020082 all species →	Conserved_site	S-adenosyl-L-homocysteine hydrolase, conserved site	Interproscan
IPR015878 all species →	Domain	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	Interproscan
IPR042172 all species →	Homologous_superfamily	Adenosylhomocysteinase-like superfamily	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23420 all species →	ADENOSYLHOMOCYSTEINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0033353 all species →	Biological Process	S-adenosylmethionine cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01251	AHCY, ahcY; adenosylhomocysteinase	EC:3.13.2.1	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068757330.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

136.1Max TPM

73.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	73.23	136.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	136.13
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	133.72
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	131.65
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	130.50
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	104.37
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	98.79
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	98.69
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	98.18
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	98.03
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	95.89
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	95.56
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	92.48
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	90.50
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	89.70
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	88.27
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	86.32
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	85.46
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	81.65
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	81.08
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	80.53
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	80.39
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	80.10
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	78.60
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	77.69
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	76.30
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	75.87
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	70.85
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	35.77
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	32.20
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	30.99
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.