Gene detail

Detailed information of XP_068758323.1 in Montipora capricornis

Genomic Location: chr7:22143372...22172098
NR annotation: XP_044183095.1, acylamino-acid-releasing enzyme-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138056433

ATGGAAGCAGAATTTGGATCTGAGGTATTTGTGGATAAAGCAGTGGCAGTCTACCGAGAATTTGCTAAGACCGGCTCTGTAGTCAATGCAAAGGTTTCTTTCCTTAGTCAGGATAATGATAAGTCAGGATCAGCAGAGCTGAACATTGTTTCCAGTTGGTCTCAGCGGGATCTGGAGAGAAATGAAAATCGTACTTTTCAAAGAAGCCATGTTACAAGTTACGATGCCACCACAAAGTCGTTTACTAATATTAGAGAGCTGTCATTTCCTGTGGAAGTTCAAAACTTACAATTATGCACTGTATCAGCAACTGGGAAAATCCAAGCCATAGTACGAAATGTTCCAGGAAGCAAAGGTCAAGAAGACAAACAATTTTTAGAGATTTGGTCCACAAGTCACTTGTTAAAAAGCATTGATGTACAAGTTTGTGAAAAGCATGGAAAGATCTATGAAGATTTTCAGTTTGGTTGTCTGGCCTGGTCATCATCTGAACAGTTCTTATTATATGTGGCAGAGAAGAAATTGCCCAAAGCTGTTTCTTACTTTGAACGGCAAAAAACAGATGCCCCTTCTGACAAACCAGCTCCAAAAAAGGGAGCACAATTCGATTTTAAGGATGACTGGGGTGAGCAGTTGGTATCCAAGAGTTGTCCCGTTCTTGTCATATACGATGTGATAACTGACGAGATAAGAGTATTAGATAATGTGCCAGACTATTTATCAGCTGGTCAGGCCTGTTGGGGACCAGATGACAGCATTGTATTTGTGGGTTGGTTCCATGAGCCATATAGACTTGGTCTGATCTATTGTCCCATGAGAAAGAATGCATTATATTCTCTGTCCCTGGATGGGAACACTCTCGAACAACTCAGCGACATCAAATATGCAGTGCACTCACCTCGCTTCAACCACAGCAAGGACAAGCTGATCTACTTTGCCCAGGATGTTGGAGGCACACATAATAAATGTGGAAGGTTGATGCAGTACGACTGGAAAACCAAAAGCACTTCAACTATTGTTGACGTCGTGGACATCCCTGAAAGAGGTGGATTTCCTGGCATCTACCTTCCTCGGTTGTTTTCAGACCGTAATTGGACGGAAGATGGGAAAAGCCTCGCCTTCACCACTGCATGGAGGAGTTACCAGAAAATTATTCTGGTTAATTGCAACGACAAGTCAGTGAAGGTCCTAACTACAACACCCGGCTGCTGGACTCTTCTCGATGTCACCAAAAACATAGTGTTAGCACAATTCTCGACACCGAACTCCGCTCCTAAACTTATGATTGCAGTTTTACCCGATGACGTTCCAGATGGCGGATTATCGTGGACACCTGTTGCACAAACCACCGACGACAGTCTTGAGAAAGAGATCGCGTGGGAAGTAATGTCATTTTCACAGGACGAAAGTTCAGATTTCCAAGATGAATATGAAGCTATATTTCTGAGGCCTGTGGTGACAGACGAGAAGAAACTACCGTTAATTGTCTTTCCTCACGGAGGACCACACGTAAACTTCAAATCAGAGTTCTTCCTACCCATCGTTTGCCTGTGCAAACTAGGATTCGCAGTGCTGTGTGTTAACTTCAGGGGTTCTGTCGGTTTTGGTCAAGCCTCCGTAAATTCGCTTGCTGGGAAGGTTGGAACCCAAGATGTGGGGGACGTGCAGTATGCAGCGAACAAGGTTCTGGAAAACTCCAGTGAGCTTGATAGTTCAAACGTCTTCGTTACTGGTGGCTCCCATGGGGGATTTTTGACTGCTCATCTCATTGGTCAATTTCCGGGTTTCTACAGAGCGGCTGCCATGAGGAATCCTGCTCTCAATATAGCAGTGATGACCGAAATATCGGACATACCAGATTGGTGTCATTGCGAGGGAGGATACGAGTTTACTCATGACAGTACGCCAACACCTTTAATGATGTCGGAAATGCTGGAAAAATCTCCGTTTGTTTACATTTCACAGGTCAAAACTCCCACTTTAATATTCTTGGGAGCTGATGATTTACGAGTTCCTCCAAGTCAAGGAAAGAATTTTTACAGAATCTTGAAAGCACAAGGAGTTGAAACTAGGTTGCTATGGTACCCTGGTAATAACCATCCCATCGCCAAAGTCGATGCTGAGAGTGATGTGTTTGTCAACATGGCTCGGTGGTTCTTTGAGCATTTACAAAAGTGA

Transcript

rna-XM_068902222.1

TTTGGCGCTGGCCGGAAACGGACTTCCTTCAAAATGGAAGCAGAATTTGGATCTGAGGTATTTGTGGATAAAGCAGTGGCAGTCTACCGAGAATTTGCTAAGACCGGCTCTGTAGTCAATGCAAAGGTTTCTTTCCTTAGTCAGGATAATGATAAGTCAGGATCAGCAGAGCTGAACATTGTTTCCAGTTGGTCTCAGCGGGATCTGGAGAGAAATGAAAATCGTACTTTTCAAAGAAGCCATGTTACAAGTTACGATGCCACCACAAAGTCGTTTACTAATATTAGAGAGCTGTCATTTCCTGTGGAAGTTCAAAACTTACAATTATGCACTGTATCAGCAACTGGGAAAATCCAAGCCATAGTACGAAATGTTCCAGGAAGCAAAGGTCAAGAAGACAAACAATTTTTAGAGATTTGGTCCACAAGTCACTTGTTAAAAAGCATTGATGTACAAGTTTGTGAAAAGCATGGAAAGATCTATGAAGATTTTCAGTTTGGTTGTCTGGCCTGGTCATCATCTGAACAGTTCTTATTATATGTGGCAGAGAAGAAATTGCCCAAAGCTGTTTCTTACTTTGAACGGCAAAAAACAGATGCCCCTTCTGACAAACCAGCTCCAAAAAAGggAGCACAATTCGATTTTAAGGATGACTGGGGTGAGCAGTTGGTATCCAAGAGTTGTCCCGTTCTTGTCATATACGATGTGATAACTGACGAGATAAGAGTATTAGATAATGTGCCAGACTATTTATCAGCTGGTCAGGCCTGTTGGGGACCAGATGACAGCATTGTATTTGTGGGTTGGTTCCATGAGCCATATAGACTTGGTCTGATCTATTGTCCCATGAGAAAGAATGCATTATATTCTCTGTCCCTGGATGGGAACACTCTCGAACAACTCAGCGACATCAAATATGCAGTGCACTCACCTCGCTTCAACCACAGCAAGGACAAGCTGATCTACTTTGCCCAGGATGTTGGAGGCACACATAATAAATGTGGAAGGTTGATGCAGTACGACTGGAAAACCAAAAGCACTTCAACTATTGTTGACGTCGTGGACATCCCTGAAAGAGGTGGATTTCCTGGCATCTACCTTCCTCGGTTGTTTTCAGACCGTAATTGGACGGAAGATGGGAAAAGCCTCGCCTTCACCACTGCATGGAGGAGTTACCAGAAAATTATTCTGGTTAATTGCAACGACAAGTCAGTGAAGGTCCTAACTACAACACCCGGCTGCTGGACTCTTCTCGATGTCACCAAAAACATAGTGTTAGCACAATTCTCGACACCGAACTCCGCTCCTAAACTTATGATTGCAGTTTTACCCGATGACGTTCCAGATGGCGGATTATCGTGGACACCTGTTGCACAAACCACCGACGACAGTCTTGAGAAAGAGATCGCGTGGGAAGTAATGTCATTTTCACAGGACGAAAGTTCAGATTTCCAAGATGAATATGAAGCTATATTTCTGAGGCCTGTGGTGACAGACGAGAAGAAACTACCGTTAATTGTCTTTCCTCACGGAGGACCACACGTAAACTTCAAATCAGAGTTCTTCCTACCCATCGTTTGCCTGTGCAAACTAGGATTCGCAGTGCTGTGTGTTAACTTCAGGGGTTCTGTCGGTTTTGGTCAAGCCTCCGTAAATTCGCTTGCTGGGAAGGTTGGAACCCAAGATGTGGGGGACGTGCAGTATGCAGCGAACAAGGTTCTGGAAAACTCCAGTGAGCTTGATAGTTCAAACGTCTTCGTTACTGGTGGCTCCCATGGGGGATTTTTGACTGCTCATCTCATTGGTCAATTTCCGgGTTTCTACAGAGCGGCTGCCATGAGGAATCCTGCTCTCAATATAGCAGTGATGACCGAAATATCGGACATACCAGATtgGTGTCATTGCGAGGGAGGATACGAGTTTACTCATGACAGTACGCCAACACCTTTAATGATGTCGGAAATGCTGGAAAAATCTCCGTTTGTTTACATTTCACAGGTCAAAACTCCCACTTTAATATTCTTGGGAGCTGATGATTTACGAGTTCCTCCAAGTCAAGGAAAGAATTTTTACAGAATCTTGAAAGCACAAGGAGTTGAAACTAGgTTGCTATGGTACCCTGGTAATAACCATCCCATCGCCAAAGTCGATGCTGAGAGTGATGTGTTTGTCAACATGGCTCGGTGGTTCTTTGAGCATTTACAAAAGTGAAACGGCGAAGTCTTTCAATTTTAGTCTAAATTAACACAATCCTTCATCTTTATAATacgttttttgttttcagtaatGCTATctgattgcaatttttttttaaacattaaatTTGTTAACATGTGGCAAACGTATTTTTCTCCGGGAGATACTTtacttttaaagtgcccctgtgatcaaaaacaACACTTCCTTTCtctcttcaaattttgaaagtgtgtttgcttaacacctgactgacaaaaattttaagctttgatatttgtccaaaggccgtttactttgagcttaagttttatatttcacggtccgccatttcTCACGTCCAAAACTAGCATAAAATTTCGttgtgtgaatgcagcttgttatatatgcaaaacgcgaggtTAAAAGTCTGagagcccaaaactcccgtgctgcgtattaattctgcggcgtacacacgcattgcattcttaaactagtgagtctttgacgtcatttcctccttgatccagctctctcgtcattttaaagttagtaatggcggcccattaaatgggaaaattccagttaaaataaacagctgtcttttttaaatcaaggcttaaaactttggtcgcttagtggtTAGTTAACATACTTTTAAAATCGGACGTAAAgatagcagagtaacaatagctctcaaaaaagaaacgaccgttttcaatttacaatatatgtttcgacatactcatgtcatctttagttgcaaatgagctttttaacGGTTGTACACTTGAATTTATTTTAAGGTACGTTACAAAATTACGTGTCAGAACTTGCGTAaaatttgtcttttattttattgctgtgtgcgctatttttgtttcctgCGCATTTCATACTTCATATtcaaattgtacgcaagttctgacaCGTAATTTTGTAACGTACCTAAATATAAATTCAAGTGTACAACCGTTAAAAAAGCTcacttgcaactgaagatgacatgagtatgtcgaaacatgtatCGTAAATTGAAAcctgtcgtttcttttttgagacttttgaaatccaaagaaaaataagaatcgATAATTTGATCAAATGGGCACTTTACGCTACCGTGGGAGTTGTATGTCCCCAACctagttcccagggtctctcttgtaATCGCCGGTTACAAGAgagaccctgagaacgaggttggtaTGTCCCATGGGCGAGCAAGGCATGGGTCTTTTCGACATGTGACGGcccaaactgctttgcatttcagttttggaacaatttttgcattgcaaagtagTTTGTTTACCCGCTTGGTCGTGTATCAAACTCTGGCATTAAGTGGTTTTTTAGAGGGCCGAGGATTTTGCCAAACCCTTATTTTTTTCGATatctttttcattatttctcTGTTGTTTGCTGGACAAATTGGCtcaaattaataaaatttgttaTGTAACATAAAATGCTAATTAACAACAAAAGTATAACAATGTAATTTATGATTacagaaagaaataaaaaaatggaagaGCAAAATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P13676	Acylamino-acid-releasing enzyme OS=Rattus norvegicus OX=10116 GN=Apeh PE=1 SV=1
Q8R146	Acylamino-acid-releasing enzyme OS=Mus musculus OX=10090 GN=Apeh PE=1 SV=3
P13798	Acylamino-acid-releasing enzyme OS=Homo sapiens OX=9606 GN=APEH PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002446 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00326 all species →	Peptidase_S9	Prolyl oligopeptidase family	Domain	Interproscan
PF19283 all species →	APEH_N	Acylamino-acid-releasing enzyme, N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001375 all species →	Domain	Peptidase S9, prolyl oligopeptidase, catalytic domain	Interproscan
IPR045550 all species →	Domain	Acylamino-acid-releasing enzyme, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42776 all species →	SERINE PEPTIDASE S9 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008236 all species →	Molecular Function	serine-type peptidase activity	Interproscan
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01303	APEH; acylaminoacyl-peptidase	EC:3.4.19.1	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068758323.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

20.0Max TPM

9.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	8.97	20.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	20.03
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	19.16
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	18.58
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	17.65
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	17.61
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	15.92
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	15.54
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	14.74
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	14.61
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	14.08
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	14.04
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	13.88
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	12.96
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	11.79
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	11.64
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	11.33
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	10.94
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	10.51
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	8.17
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	7.66
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	7.38
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	7.35
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	6.34
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	5.94
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	5.58
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	5.02
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	4.46
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.