Gene detail

Detailed information of XP_068758447.1 in Montipora capricornis

Genomic Location: chr7:23990941...24009115
NR annotation: CAH3136861.1, unnamed protein product [Pocillopora meandrina]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068902346.1

CAGCGTTGAAATTGTAACAACTTTCTTGCTCATGTAACGGTACGAAAGTAACCCTGATTCCAGCTGATTCTCGATTTTCAGTTTGTCAACTAAACAAGGAAATTGGTGATTGTAACCAGTTTTAATGACTTAAAATGGCAGAGAATGGTGTTATTGGCGAATCGGGGCATGGCCCCTTCTGGGCAATCAAGGTTGTGGACGCTAGTAAGGATGGCGAATTCGTGAAGTTCACGATACAAACAAACATTGGTACTGAAGGTGACAGTGAAAAGGGTGTTGTAGTTCTACGACAGTATGAAGATTTGGAGTGGCTTTATCATTGCCTGATAGCACACAACAATGTAGATGGAGTTGTTATTCCACCACTGCCTCCAAAACCCCTTACGTCAGTCAGTGCTGCTGAAGCACGGTCTAAAAAGCAGTTGGGAAAAGATGCAAGGCATATGGTTGCAGATGAGTTTTTGAGAGATTGTCGCAACTTTGAGAAGTTTCTTCAACTTGTTATTCTACACCCTGCCTTTTCAAAAGATGAAGATTTGCAGAAATTTCTGCAAGAGGAAAATCCACCAGTAAGAGCCAAAGTGAAGAAAGGTGTGATAGAAAGTTTGTCTCGCTCTGTCAGCGACTTTAGACATCACAACCACAAGGATGTAGATGAAGAATTTCAGAATAAGAGAGATTTTGTCGAACAATATACACCACTGGCTAAAGAAACTTATGGGAATTTCGTCAAAATGGTCCATAGTCAACAGCGAGTTGCATTAGCTGTGAATGACTTCAGTGCTGCAGTCATGACGTGTTCTGCAAATGATGACGACAGAAGCAAGGAGATGAAAGGGAACTTGGCAACTTTTGCGAGTTCTCTGAATGGAATCAAGGAGTCACTTGACGTAATGTCCACCAATGATGACAATACATTAGGATTCACTTTGGAATTGTATTCGCGTTACATGGAGGCAGCCAGGGAAATGCTTTTCCGTCGAACGTGCAGGCTGGTAGAGTTTGAAAATGCAACGAAAGCGTTGGAAAAAGCAAAGCCCAAGAATCAAGAAGCGCTTCAAAAAGCCAAAGATGATGCAGAAACAGCCTTCAAGACGATCTCAGAAGATTCAAAAAAGGAGCTTGTTCGTTTCAACAACCAAAGAGTTCTGAGCCTGCAGTCAAGCCTAATTCAGTATGCGGAGTCTCGCCTAAAGAATGGAAGAGATACCTACGCCATATTAGCTAAACTATTAAATAGCTTAAAGAAATCGTCGTAATTGACTAGAGGTTGAAAATTAACCGCAAAAACAAGCAGTTTGATGCTAATTATCGAGGAAAATCAAGattgaattagataagagtgtttctCTATTAATCTGCGGTCTTGCCCGAGCAAAGTCACAAATggacttatttttagatacactttatgcgcgaaaacaaacaaagggctgccactttaaccaatcagaagaagccaagTCActcgtgactgcttctgccatgttttttcaaggGATTTATTTTCGCGTGAACGGGTATTccaaaaatagactcatttgtgactgtgcttgGGAGCCCACTTAAGCCATAAGAACACTCTTAGCTAATTCACTCTTGGGAAAATGTAAAGCAATCATTTTCATACTCTTTGACTTGCAATGCGGAAAGAGTTTTGAATATTATGAGACCAATATCCAAGAATATCAAAGAAATTCGCGCCAAAAAAAACTTGCTGAAATGCGTTTTTCAGCGCTCGGCTTTTCCCGCCTTTAGCGACAGTTGAAAGTGTTAGCTTTGTGTTATGATTGGCCCATTTAGTTGATGGTTTATTGGTTCATTATTATCTCGTTTGGTTGATCTTGGTGGCAATCGATTGAAAACAGCTTTAGAATCCGAACTTAACATTTTTGAGTTCAACACATGCGTATGGGGAAATCTGTACAAACGCCATTGTTTCGTTTGGTCTCATTAACATACGGATTTGTTTCTAGAAGGCGCCTTACTGTTCACAAATGGAGTTTAAAGTTGAGAGACCTTGTTCAACTAAGCTATTATCTCCATTTTAAGCCTGTTTGGTGTGGTAATCAACGAAATATTTTCCATCAAAAAAACTGCTAAGGCGATGGAGCACCCTACATTCTTGTTgaatttcaattatttaagcCAAAATTGTGCAAAGATTAGTATGGGTTATCACATGCTGACGAGTGAAAttaaggaataatttcacgcgcgttttgtccaaattcaaataattttgggCAAAACGGAGGTTAAATTTTTCCCGAATTTCACGAGTATGCCATTTGATTACCTATTAATATCATGAGTGATAGTTACATTCATAAGAGGCAGTctattttcaaacctggacgccattttggcactgtaggaaaagttgtcatggcaacattgtaatttcacatgtgaacttataaattaacgctgcaatttcgcgccaaaattaaggaggaATTTGTCACCCATATTATTATAGGGGATATCGGGCCCAATTTATAATAAAGCTGATTGTacaatacactttcaaaattcaGTGATGATTTTTAGGGGGATTGATTAGAACTGAAACGATTGTTGTATGCTCATGAGGTAAATTTTGCGAGAATTTGACAATCCTACTTATGAGGAAACAAGATATTATCTGTGACTACATCATTAAGTATTttttaagttaaaaaattaaaatgggaGTAGTACAAATTGCAGATAGCGTTCGTGTCACCTACAGACGCACGTAATTTAACGTCAGTAAAAATTACATTTGGCCGTTTTTAtaactagagacgcataatccgtccagattatgcgtctctcatgttatctgTCTTATGTAAAGACAGGACGAACTATGATAGACACATAATCTGTCTGAGACGAACTTGGGCGGCAATCATCAGTTGTTCCCCGTCTTTATGATAGACGAAATTAACAGACGcgggaaaaaaatgtttgcccaagttcgtcccacacgaattatgcgtctctagtatgaAAACGGCCATTTAAATTCATACTTTTTGTTAGATTTTGTGTATAAGCCATATATTTAAATGGCACCCTATTAATAATTATCGTATTATGGTATTATCTTGAAATACATGCTGATTAGAGGCATAAACGTCGTTTACAGAAGAATCTCCCTCTCAGTATCGCAAATTCTAATGAGGTTGAATGGCACATTTGCAAGATGGCATCGTCAATTTAACTACCAGAAACTTCCAGGGTTTGCTATTTCTGTTTCGTGCTTTAAAACTGGGattttgaagaaagcaaaacatGGATAAGGTGGATAGGGCTTTGGGCAAGTAATGTTATCATAATTATATATTTCCCTTTATATAAATATAAAGGAGGGTTTATTGGACGTCTTTTCGCATTTGGTCTATTTTCCAGTCGGTTTGCAGTCACGTTTGACTTGTATATTTCTTTTGATACGAATAGATAAGAATTGCTACTTATAGTTGCAGAAGATCATTATATGTAAATCTTGAAATTCTGTGATATTATAACCTAGTTAATAAATGGAGACGGTTATGAAACTCTTTTGATTTAGTTCACGTTTATCTTCACTGTTTGGCCTGGACCATGCACGAAACACGCCGTGTTTTCGATTAATTTTTTCGAAAACGTGACAGTGCACGGTTGCTGACAATTCAACTTCAATTGCCACGACACTGTTCTCGCTTTCGAAATTTGCAGCGTTTCATAACCTattcctcgattaactatggtgaAAATTAGGGAAGACGCTTGTTATATTGATTGACCCGCAGAGAAGACATCTGTAGAGATCATTTTGAACATTACAAGATGCGTATAGAatcattaatttaattttgcaacattcTGTGGCGCGATGGATTACAACTATATTTGAGATAATTATTGTGATTCagttaaagaaacaaatagtggAATTTTCATAGCGAATTTACCGGGAATGTAATTTTATAATGAAATATCTTCTGGCTTTCATCAAATGCAATTATTTTTTGAATAAGGTAATAAAAATATTCACTCTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80ZJ7	Sorting nexin-32 OS=Mus musculus OX=10090 GN=Snx32 PE=2 SV=1
Q6P8X1	Sorting nexin-6 OS=Mus musculus OX=10090 GN=Snx6 PE=1 SV=2
Q5R613	Sorting nexin-6 OS=Pongo abelii OX=9601 GN=SNX6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004441 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09325 all species →	Vps5	Vps5 C terminal like	Domain	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015404 all species →	Domain	Sorting nexin/Vps5-like, C-terminal	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45850 all species →	SORTING NEXIN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17920	SNX5_6_32; sorting nexin-5/6/32	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.