Gene detail

Detailed information of XP_068758455.1 in Montipora capricornis

Genomic Location: chr7:24542299...24552951
NR annotation: XP_029212735.2, F-box only protein 7-like isoform X2 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068902354.1

ACGAAATTACCGCGCGCCTCCACGCGAGCCCCAAAAACTTCATTCATTTCACAAATATCGTTAAAAATAACATGCCAAAACGTAACAAAAAAGGACACCAAGAAACTGAACAAGGAGGAAGGCCGCCAGATTTGACGCTTGCAAGTTTTTTAAGTGGTTCATTGGCACCACAAACCTCAGATCCTTCTGAAGATAGCAGAGCTTCCACATCGAAACAAGAACCAGACTTCAATTTGGCGTTAGAGGAAGAACAGACAGGAACTGAAACGCTTGGGTTTTTCGTTAAAAGAACAAAGAAGGGGAAACTACCCATTTCATACGAGAATCGCGCCAAGGGAAAGAAAGTTACCGTGATAAGTAATGTTACTGGTGACCCAGGTATCTTGCTTCAGGAGTTAAAGAGGAAAATTGGAGCTGGTGGGGTTGTGAGAGGGGATTGTGTGGAAATACAAGGAGATCATCAAGTTGTGGtggaaaattatttacaaagccATAAATCGTGTTTGAAGTAAAGAAGGAATACCCTGTTATTCTACCCTATCCCCCACCCCACACCCCATGACATTGGAGAATAATTTTACCCAGAGGTCCACGCGGGTGGTGATGAAAACAAATTATATGAAATGGCTGCCATCATAGATTCTCGCAAATTGCAAATTTGGTAAAATTTTGTACTGCGTTTGGGCAAGTTTACTTGAAATGAAACTCAGAGTTGTCTTTAACAGGCAAAGAGAAGTGGTTGAGTTGATTGGAGACGTGATTACGTTGGGAAATTGCCGAGAGACCGTCTGCAGCAAATTTGGTTTGAGAACAAACAGTTTTGATTTAAGTCTGAATGGCCGTGATTTTCTTGTCGATGACTCTGTATCGCTGACAGATTTGGGTATTGTAAATGGTGATTTGATCTATGTTGTACCTAACACACTGCAACCAGAGGAAGCTCAGAGTAGTCAACCCACAGCTTGTACTTCCAGTAATGTGCGTGTTCATACAAAGGTTACCCAACAGGATCATTTGGTTCAACATGCTGGGAGTTCTGCTGAGGTTTCCACAGTTGCCTCTACCAGTCATTGTTCTCAAACAGACCTACACCCTAGCAACAGGGAAAAAGCTGGTAATGAGAAACAAAGTCAACAGCAAATGTCATTTGCTGCACCACTTAGACCTTATGTCCTTCTTTGCCGTGATGGCATTCCGGAAGCCTTGCAAGAATTGTACAGATGCACAGATGTTGGAACCATTCATGAGGCTGCATGGGTTGTGGTCCATTTCCTCATGTTAGAGACTGGTTACAATATTCTGCGAGAGgATTCAACAGAAATCACAAATACTGAAAGACCAGACAGGATTGTGCCCCCTGTTGACTGGAAGAAGGGTGGAATTGCAAGAATTCAGTACACACATGCCAATTGCCCTGGTCTGACCTGCTCTTTGACTTTTACATCCTTGGGACCCCATGTGATGATTCATGGTCTTGCTGATTCAGTGCCAAATAGTGAGGTGTACCAATGCCACTTGCAGCCAACTGATTTTGTCAGAGGAAACGTAGACCTCAAAGCAAATGGAGCAAGTTCAGTGTATTACAATCTTCATCGACTTTCAAGACTTGTCAAGGACCAAGTCTCTTATCCATTGCTTTCCTTCATGAGAGCTGCTCTCGGATTACCTCAGTTATGTGGCCTTATGGCTCTACCAGCAGAAGTAAAGCTGATGATTCTTGGAAGGCTCCCAGTTCATTGCATAATCCAAGTTTCTCGTACCTGCCGAGAGCTGTATTCTCTGGCAAACGATTCAACATTGTGGCAGCACCTTGTGCTGAGAGATTTTGGTAGAATAGCGAAGGAACAAACCAGAAACTGGAAAGAGGAATACATTTCACTGTACAAGCAGAGGCAAACTCAAGAGCAGTTAGCAAAACAGGTGGTTTTGCCATCCCGTGAAGTATACCCCCATGGCTATTTCATAGGCCCACAGCCCTCCAGAGGAGACACATACCCCCCAGGGATAATAGGTGGCCATGGAGATTTATTTCCTAATTTACCATTCATTGCTGGTGGATTTAACCCAGCACCTGGCTTCCCACCTGGGGTAAGACCAGGTGTGGGATTGCCGAGACCCCGCTTTGATCCATTTGGTCCACTGCCGGACATGAATCACATACCTGGACCCCCAAGAAGGGGACCACACCCTGCACCTCGTGGTAGCTTTCCTCCTGGGTTCTTATGatggaaaaaaaactaaaatttacTGTAATTTATTACCAAAGAGGTATTTCAGAATCAATGCAAGCAATGTAAATCCAACAGAGAAATCTAGTGACTTGTTATTAAAAAAATCCAATTGGGGATTGTTGTTTTTACTCAAGAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y3I1	F-box only protein 7 OS=Homo sapiens OX=9606 GN=FBXO7 PE=1 SV=1
Q68FS3	F-box only protein 7 OS=Rattus norvegicus OX=10116 GN=Fbxo7 PE=2 SV=1
Q3U7U3	F-box only protein 7 OS=Mus musculus OX=10090 GN=Fbxo7 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007490 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11566 all species →	PI31_Prot_N	PI31 proteasome regulator N-terminal	Family	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021625 all species →	Domain	PI31 proteasome regulator, N-terminal	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR047118 all species →	Family	F-box only protein 7	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15537 all species →	F-BOX ONLY PROTEIN 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:1903204 all species →	Biological Process	obsolete negative regulation of oxidative stress-induced neuron death	Interproscan
GO:1903599 all species →	Biological Process	positive regulation of autophagy of mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10293	FBXO7; F-box protein 7	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068758455.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

55.3Max TPM

14.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	14.72	55.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	55.32
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	28.13
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	26.65
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	24.62
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	24.42
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	24.03
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	23.88
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	22.43
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	20.43
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	19.91
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	17.53
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	17.02
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	15.62
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	15.23
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	14.35
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	14.21
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	14.13
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	14.03
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	13.86
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	13.65
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	13.55
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	13.19
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	12.82
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	12.41
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	12.13
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	12.05
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	11.98
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	11.23
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	11.12
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.