Gene detail

Detailed information of XP_068758570.1 in Montipora capricornis

Genomic Location: chr7:25822727...25833757
NR annotation: XP_029205670.2, nuclear transcription factor Y subunit beta-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P25210	Nuclear transcription factor Y subunit beta OS=Petromyzon marinus OX=7757 GN=NFYB PE=2 SV=1
P25207	Nuclear transcription factor Y subunit beta OS=Gallus gallus OX=9031 GN=NFYB PE=2 SV=2
Q32KW0	Nuclear transcription factor Y subunit beta OS=Bos taurus OX=9913 GN=NFYB PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005295 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00808 all species →	CBFD_NFYB_HMF	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003958 all species →	Domain	Transcription factor CBF/NF-Y/archaeal histone domain	Interproscan
IPR003956 all species →	Conserved_site	Transcription factor, NFYB/HAP3, conserved site	Interproscan
IPR027113 all species →	Family	Transcription factor NFYB/HAP3	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11064 all species →	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001228 all species →	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016602 all species →	Cellular Component	CCAAT-binding factor complex	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08065	NFYB, HAP3; nuclear transcription Y subunit beta	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068758570.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

79.4Max TPM

35.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	35.75	79.38

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	79.38
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	67.02
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	65.03
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	63.90
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	57.20
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	57.17
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	47.77
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	47.44
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	46.68
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	44.96
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	44.05
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	43.97
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	43.74
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	42.53
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	42.27
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	41.45
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	41.18
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	40.36
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	40.35
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	40.00
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	39.54
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	35.20
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	35.04
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	33.76
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	30.80
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	26.67
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	25.82
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	24.62
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	19.61
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	19.52
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.