Gene detail

Detailed information of XP_068758587.1 in Montipora capricornis

Genomic Location: chr7:26202840...26221959
NR annotation: CAH3046842.1, unnamed protein product [Porites lobata]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068902486.1

GAgttctgtttgtttcattgATTCTTTGTGCTTATGATATGATCTTTCGAACAGGATTTGCCAACAGttttggcgatacaagcaaagaaaaaaaggtatAAAGCGCAGAAAGCACGCATGAAACCTGACGATTCCAAGACCAAAGCTAAGAGTGGGAGTGTGTCTAGTTTCAATGACGAGGATTACGAAGTGGACGAAAACTCGGACGAAGAAGAGCAAGAGGATCCAGGAGATTATATTAAAGGTGGTTATCATCCAGTGCGTTTGGGTGATATGTACAACAGTCGCTATAGTATAATCAGAAAGCTAGGATGGGGTCATTTCTCAACTGTATGGCTTGCATGGGATCTCAAAGATCGTCGGTTTGTAGCACTGAAGATTGTAAAGAGTGCCTCTCATTACACCGAGACAGCAATAGATGAAATGAAACTTCTGAGAACAGTCCATACCGCAGACACAGATCACATTGGTTATAAACATGTGGTCCAACTCACTGatgatttcaaaattgtagGAATAAATGGATCTCATATATGTATGGTGTTTGAAGTGTTAGGTCACAACTTGCTTAAGTTAATAATAAAGTCCAGCTATAGAGGAATACCTATCTTTAAAGTCAAAAGTATCATAAAACAGACATTACAAGGACTGGATTATTTACATACAAAGTGTAAAATTATCCACACAGACATTAAGCCTGAGAACATTTTATTGTGTGTACATGAAAAGCATGTTCAGCAACTTGCAGCTGAGGCAGCCACAGCTCGAGCATCTGGGGTCTATTCACCTGCATTAATTAGTACAGCTCCACCATCTGTCATGCAGcAATGCACAtcaacaaaaatatcaaaaaacaagaagaagaaaatgaagaaaaagctaAAGAAGCAGATTGAAAAGCAAAAACAGCAGCAGGAGGAAATAGAACAAGGAATGTTGGAAGATAATGGGGAAGGTTCTGACAAGGAAGGAGATGAATGTGTCAGTAGTAAAGTAGAAAACTGTGCAGAGAATACAAGAGAGAATACAGAGAAAACATTAGAATGTGAGCAAGAATCAAATGAACCTCCTGAATATACAGAAGAAAAGACTTTGGAAAATCATCTTGATAGTACATCTGTTGAACTGACAAATGAACTGAATAAGCAAACACTACAAGAGAAAAGTGAGACTGCATCAAATGATGCTATGTCAATATCAGAGGAACAGGTTGAACCAGATGGTACACTATGCAATGGAGATGTGCAAGATACTGATAGCAAAAGTGTTGATATGGAATCTATATCAGAACAGAAAGTTATAGCTGAAGAAGATAAAGACAATTTTGAGGaagaaaacattgaacaagATGAACCTGAACAAGATGATGATTGCATAAGAGTGAAAATTGCAGATCTTGGGAATGCCTGTTGGGTGCACCACCACTTCACAGAGGAAATTCAAACCAGACAGTATCGTAGCCTGGAAGTATTGATAGGAGCTGGTTATGGTCCTGCAGCTGACATCTGGAGTACAGCATGCATGGCGTTTGAATTAGCTACTGGAGATTTCTTGTTTGAGCCTCATTCAGGGGAAGACTATTCGAGAGATGAAGatCACCTTGCCCATATAATTGAACTTCTTGGAAAGGTGCCCAGGAACATTGCTTTATCAGGGAAATATTCTAGAGATTTCTTTAACAAGAAAGGGGAACTCAAGCATATCTCCAAGCTGCGACCCTGGGGCTTGTATGATGTACTTCGTGAGAAGTATGAGTGGCCTGAGGAAGATGCCATGGATTTCTCCGCTTTCTTGCTTCCCATGTTGGACTTAAACACTGACGAACGAGCCACCGCTGTACAGTGCCTTGACCATGTGTGGCTTAAAGATGTGTAAAATTCAGTGATTGAGATGGTATGGAGATTCTCACAACAAATGTCACTTCCTATTGCGTTTTCTTCAAGTTGAAGCTAAGATGGCAAGGTgtctttttttatgaaaaaggaTATTGTATTTAAGCCCACCACAGTCCAAGAATGCATCTTTATCTCAAGCTAAGAAAAAGACTTGACAGGAGTTTTTTCACTGTTTGGGACTACCAGTACCTTGATTGACAAGTAACATGCTATCACCCTGACCCACAAAAGGATGGATTTATAAAGGACAAGTTTTGGATTCATTCCTTTTTTCCTTATACTGAGCAAATTCTTGCAGCAAGAAGTCTGCAACATCTTGATACATGTAGGCATGCAAGTTATCAGCATgtgtaaacaaataaaaaggCCAGACATTGCAAGGGCTTGAAACTTGTACTGTACCAAACAACTAAGGTGTACAAACTATCATGCTTTCTTGctgtaaattttttttatatgaTGTGTTATAATATACCTTAAAACTGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UPE1	SRSF protein kinase 3 OS=Homo sapiens OX=9606 GN=SRPK3 PE=1 SV=2
Q9Z0G2	SRSF protein kinase 3 OS=Mus musculus OX=10090 GN=Srpk3 PE=1 SV=1
B8Y466	SRSF protein kinase 3 OS=Sus scrofa OX=9823 GN=SRPK3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003594 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR051334 all species →	Family	Serine/Arginine-Rich Protein Kinases	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47634 all species →	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0000245 all species →	Biological Process	spliceosomal complex assembly	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0050684 all species →	Biological Process	regulation of mRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15409	SRPK1; serine/threonine-protein kinase SRPK1	EC:2.7.11.1	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068758587.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

881.8Max TPM

46.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	46.43	881.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	881.77
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	46.48
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	44.98
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	44.81
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	43.27
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	41.24
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	39.26
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	38.51
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	38.16
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	34.08
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	33.72
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	33.36
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	29.55
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	28.94
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	28.92
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	27.72
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	26.40
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	25.75
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	24.97
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	23.11
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	18.43
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	17.71
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	16.69
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	16.63
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	14.65
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	14.45
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	14.39
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	12.77
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	10.93
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.