Gene detail

Detailed information of XP_068758632.1 in Montipora capricornis

Genomic Location: chr7:26890034...26908960
NR annotation: XP_015761822.1, PREDICTED: endoplasmin-like [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138056678

ATGGAGAAAAGATCGTTTATACTGAGCCTGTTAGGCCTTCTGTTAATTTCATCTGTCTGTTTAGCTGATGATGAGAAAGTAGAAGGAGAAGCAGAAGCTGAAACTCCTACTAAAGTGGATGAAGATGTTGGAAAAAGCCGAGATGGGTCAAAGACAGATGATGAAGCAATAGAAAGAGAAGAGGAGGCAATTAAACTTGATGGCTTGAATGTAGCACAAATGAAGGAAATTAGAGACAAAGCTGAAAAATTTGCATTCCAGGCTGAAGTTAGTCGCATGATGAAGTTAATTATCAATTCTTTGTACAGAAATAAGGAGATTTTCCTGAGGGAACTTATTTCAAACTCTTCTGATGCCTTGGACAAGATTAGGTTTTTGAGTCTCACAGACAAATCAGCCCTTGCTGCTACAGAGGAACTGTCCATTAGAATCAAAGCTGACAAAGAAAACAATGTCCTTCATGTAACAGACACTGGTATTGGAATGACAAAAGAAGACTTGGTCAAAAACCTTGGTACTATTGCCAAGTCAGGAACTAGTGAGTTCTTCCAGAAGATGGCTGAAGCATCAACAGATCAAGCAAGTGATCTTATTGGCCAGTTTGGTGTTGGTTTCTACTCTTCATTCCTTGTTGCTGACCGTGTGATTGTAACATCCAAGCACAATGATGACAAACAGTACATCTGGGAATCTGATTCTGTTTCTTTTAGTATCACTGAGGACCCAAGAGGGGATACCCTTAAGAGGGGAACAACAGTCAGTGTTCACTTAAAGGAAGAAGCTAGAGACTTCTTGGAACCTGGGACAATCAAGGATCTCGTTAAAAAGTATAGCCAGTTCATCAACTTCAACATTTACTTGTGGACAAGCAAGACTGAGGAAGTTGAGGAGCCAGTTGAGGAGGACACTGCTGAAGAGAAGAAAGATGATGCAGGTAGTGAAGACAAGAAAGAGGATGAAAAAGATGAAAAGGAAGACGAAAAAGTGGATGAGGACAAGGAGAAAGATGACAAAGATGATGAGGCTGAGGTTGAGGAGGAATCAGAAGAGAAAGAGAAAAAGCCTAAGACCAAGAAGGTAGAAAAGACAGTTTGGGATTGGGAACTTGTCAACACCAACAAGCCAATCTGGACCAGAAAGCCCAAAGATGTCCAAGATGAAGAATACAATGAATTCTACAAATCATTTACCAAAGACCACGATGAACCCCTGGCAAAGACTCACTTTGTTGCTGAAGGAGAAGTAACTTTCCGATCAATTTTGTATGTACCCAAATCTGCCCCACACAACATGTTTTCTGAATATGGCAAAAAGATGGACCAGATCAAGCTCTATGTGCGGCGTGTGTTTATTACTGACAACTTTGAAGATATGATGCCTAAATATCTGTCCTTTATTCGTGGTGTTGTTGACTCAGATGATCTTCCTCTGAATGTAAGCCGTGAGACACTGCAGCAGCATAAACTGTTAAAGGTGATAAAGAAAAAACTGGTCCGCAAGGCTTTAGATATGATAAAAAAGATTCCCAAGGATGAGTACATGGACAAATTTTGGAAAGAATTTAGTACAAGTATCAAGCTTGGTATCATGGAGGACCATTCCAACAGAACACGCTTAGCCAAACTGTTGCGCTTTTACTCTTCCAACTCTGATAAGGAGATGACCAGCTTAGCTGAATACTTGGAAAGAATGAAAGAGAAACAAGATGCCATATACTTTATGGCTGGAACTAGCCGCAAAGAGGTTGAGAACTCTCCATTTGTGGAACGTCTGCTGAAGAAAGGATATGAAGTGCTCTTCCTGGTTGAACCAGTAGATGAATACTGTATCCAGAGCTTACCCGAGTTTGAGGGAAAGAAATTCCAAAATGTAGCCAAGGAAGGACTAAAAATTGGCGAAGACACTGAAGCACAGAAGAAGAAGCAAGAGGGATTAGAAAGCACATATGAACCACTGCTAAAGTGGTTGAAGGATGATGCTCTGAAGGATCTGATTGAGAAAGCAGCAGTGTCTCAGCGCTTGGATGAGTCACCTTGTGCTCTTGTTGCTAGCTCCTATGGCTGGTCTGGTAATATGGAAAGGATCATGAGATCGCAAGCATATGCCAAAAGAGATGACCCCAGTAATGAGTATTATGCCACTCAAAAGAAGACACTTGAGGTAAACCCCAGGCATCCATTGGTCAAAGAATTGTTGAAGCGAGTGGAGACTGACAAAGAAGATAAAACTGCGAAAGATCTTGCCCGTGTGTTGTTTGAAACTGCTACTTTGAGATCAGGCTACATGATCAAGGATTCTCAAGATTTCGCTGGTCGCATAGAACGCATGCTCCGCCTCAGCATGGGAGTTGACCTTGAAGCTACTGTAGAACCAGATGAGGAAGAATCTGAGGAAAAGGAAGAGGACGAGAAAGATGGAGAGGAAGTGAAAGCAGAGGCAGAAAAAGAAGAGGAGACGACTGATAAGGCAGAACCTGCTGGAGAAGCAGAAGCAGCTGAAGAGAGCAAGGCTGATGAAAAGGAAGATGAGGTTGAGGGGGAATCAAAGGAAGCACCTGCAGAACCAAAAGATGAACTTTAA

Transcript

rna-XM_068902531.1

GAGCTCTGGCCGTGGTAAGAGCTGGTTGGTTTGAACAATTGAAAGCAGCTTATTAACTTCTCTTCCTTACGGAGTTTTCCAAAATTTTCCTACACTGGGTGGCATTATAGGTTTTCCACTTGTTGCCAAAGAATGGAGAAAAGATCGTTTATACTGAGCCTGTTAGGCCTTCTGTTAATTTCATCTGTCTGTTTAGCTGATGATGAGAAAGTAGAAGGAGAAGCAGAAGCTGAAACTCCTACTAAAGTGGATGAAGATGTTGGAAAAAGCCGAGATGGGTCAAAGACAGATGATGAAGCAATAGAAAGAGAAGAGGAGGCAATTAAACTTGATGGCTTGAATGTAGcacaaatgaaggaaattagAGACAAAGCTGAAAAATTTGCATTCCAGGCTGAAGTTAGTCGCATGATGAAGTTAATTATCAATTCTTTGTACAGAAATAAGGAGATTTTCCTGAGGGAACTTATTTCAAACTCTTCTGATGCCTTGGACAAGATTAGGTTTTTGAGTCTCACAGACAAATCAGCCCTTGCTGCTACAGAGGAACTGTCCATTAGAATCAAAGctgacaaagaaaacaatgtccTTCATGTAACAGACACTGGTATTGGAATGACAAAAGAAGACTTGGTCAAAAACCTTGGTACTATTGCCAAGTCAGGAACTAGTGAGTTCTTCCAGAAGATGGCTGAAGCATCAACAGATCAAGCAAGTGATCTTATTGGCCAGTTTGGTGTTGGTTTCTACTCTTCATTCCTTGTTGCTGACCGTGTGATTGTAACATCCAAGCACAATGATGACAAACAGTACATCTGGGAATCTGATTCTGTTTCTTTTAGTATCACTGAGGACCCAAGAGGGGATACCCTTAAGAGGGGAACAACAGTCAGtgtTCACTTAAAGGAAGAAGCTAGAGACTTCTTGGAACCTGGGACAATCAAGGATCTCGTTAAAAAGTATAGCCAGTTCATCAACTTCAACATTTACTTGTGGACAAGCAAGACTGAGGAAGTTGAGGAGCCAGTTGAGGAGGACACTGCTGAAGAGAAGAAAGATGATGCAGGTAGTGAAGACAAGAAAGAGGATGAAAAAGATGAAAAGGAAGACGAAAAAGTGGATGAGGACAAGGAGAAAGATGACAAAGATGATGAGGCTGAGGTTGAGGAGGAAtcagaagagaaagagaaaaagccTAAGACCAAGAAGGTAGAAAAGACAGTTTGGGATTGGGAACTTGTCAACACCAACAAGCCAATCTGGACCAGAAAGCCCAAAGATGTCCAAGATGAAGAATACAATGAATTCTACAAATCATTTACCAAAGACCACGATGAACCCCTGGCAAAGACTCACTTTGTTGCTGAAGGAGAAGTAACTTTCCGATCAATTTTGTATGTACCCAAATCTGCCCCACACAACATGTTTTCTGAATATGGCAAAAAGATGGACCAGATCAAGCTCTATGTGCGGCGTGTGTTTATTACTGACAACTTTGAAGATATGATGCCTAAATATCTGTCCTTTATTCGTGGTGTTGTTGACTCAGATGATCTTCCTCTGAATGTAAGCCGTGAGACACTGCAGCAGCATAAACTGTTAAAGGTGATAAAGAAAAAACTGGTCCGCAAGGCTTTAGATATGATAAAAAAGATTCCCAAGGATGAGTACATGGACAAATTTTGGAAAGAATTTAGTACAAGTATCAAGCTTGGTATCATGGAGGACCATTCCAACAGAACACGCTTAGCCAAACTGTTGCGCTTTTACTCTTCCAACTCTGATAAGGAGATGACCAGCTTAGCTGAATACTTGGAAAGaatgaaagagaaacaagaTGCCATATACTTTATGGCTGGAACTAGCCGCAAAGAGGTTGAGAACTCTCCATTTGTGGAACGTCTGCTGAAGAAAGGATATGAAGTGCTCTTCCTGGTTGAACCAGTAGATGAATACTGTATCCAGAGCTTACCCGAGTTTGAGGGAAAGAAATTCCAAAATGTAGCCAAGGAAGGACTAAAAATTGGCGAAGACACTGAAGCACAGAAGAAGAAGCAAGAGGGATTAGAAAGCACATATGAACCACTGCTAAAGTGGTTGAAGGATGATGCTCTGAAGGATCTGATTGAGAAAGCAGCAGTGTCTCAGCGCTTGGATGAGTCACCTTGTGCTCTTGTTGCTAGCTCCTATGGCTGGTCTGGTAATATGGAAAGGATCATGAGATCGCAAGCATATGCCAAAAGAGATGACCCCAGTAATGAGTATTATGCCACTCAAAAGAAGACACTTGAGGTAAACCCCAGGCATCCATTGGTCAAAGAATTGTTGAAGCGAGTGGAGACTGACAAAGAAGATAAAACTGCGAAAGATCTTGCCCGTGTGTTGTTTGAAACTGCTACTTTGAGATCAGGCTACATGATCAAGGATTCTCAAGATTTCGCTGGTCGCATAGAACGCATGCTCCGCCTCAGCATGGGAGTTGACCTTGAAGCTACTGTAGAACCAGATGAGGAAGAATCTGAGGAAAAGGAAGAGGACGAGAAAGATGGAGAGGAAGTGAAAGCAGAGGCAGAAAAAGAAGAGGAGACGACTGATAAGGCAGAACCTGCTGGAGAAGCAGAAGCAGCTGAAGAGAGCAAGGCTGATGAAAAGGAAGATGAGGTTGAGGGGGAATCAAAGGAAGCACCTGCAGAACCAAAAGATGAACTTTAACATCTCGACAATAGTCAAGAATCGTTCAATAGACTTGGATATGCTACCGTGCCTTGAGCCACTTTAAACTTAGTGGTTACAAAAACAACGCGGCGATGAAAAGTGTCCTGAACGCTTATTTAAAACACCTGGGAAAAAGAAATACATAGCGGTGTTTAAGTGACTTCCTATCGTTTTACGCAATGCACTTCTCGCTTAGTATGttgtaatttctttctttcaaacaaacccgattttttaaaaaaaaatgtttctctcGAATGCATGTCTATGAATTTCGTCCCTGTGAAGAATAGTCATTTTAGGCGACGTTAATAAAAGCATCATTTATACTACGAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P08110	Endoplasmin OS=Gallus gallus OX=9031 GN=HSP90B1 PE=1 SV=1
Q29092	Endoplasmin OS=Sus scrofa OX=9823 GN=HSP90B1 PE=2 SV=3
P41148	Endoplasmin OS=Canis lupus familiaris OX=9615 GN=HSP90B1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001833 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00183 all species →	HSP90	Hsp90 protein	Family	Interproscan
PF13589 all species →	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001404 all species →	Family	Heat shock protein Hsp90 family	Interproscan
IPR019805 all species →	Conserved_site	Heat shock protein Hsp90, conserved site	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR037196 all species →	Homologous_superfamily	HSP90, C-terminal domain	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR020575 all species →	Domain	Heat shock protein Hsp90, N-terminal	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11528 all species →	HEAT SHOCK PROTEIN 90 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09487	HSP90B, TRA1; heat shock protein 90kDa beta	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068758632.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

785.0Max TPM

321.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	321.07	785.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	785.03
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	776.52
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	769.40
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	668.25
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	667.20
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	661.96
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	443.23
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	425.04
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	416.11
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	409.50
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	402.77
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	385.02
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	363.99
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	344.22
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	344.00
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	309.12
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	308.24
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	306.72
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	304.96
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	300.62
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	293.22
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	292.87
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	282.05
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	270.61
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	265.53
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	259.31
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	190.03
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	110.87
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	103.05
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	99.19
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.