Gene detail

Detailed information of XP_068758643.1 in Montipora capricornis

Genomic Location: chr7:27136989...27159268
NR annotation: XP_029205144.2, lysine-specific demethylase 5C-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138056691

ATGGAGGACGAAGGGGAAGAGTTCATTTTCAACCCACCTCCAGAAGCTCCTGTCTTCGAACCCACGGAGGAAGAATTCCAGGACCCTTTGGCTTACATTGCAAAGATAAGGCCGTATGCAGAGAAAACTGGCATTTGCAAGATTCGACCTCCACCGGAGTGGCAGCCCCCTTTTTCAGTAGATGTGGAAAGTTTTAGGTTTACACCAAGGGTTCAGCGTCTGAATGAACTAGAGGCAAGGACAAGGGTCAAACTCAACTTTTTGGATAGCCTTGCCAAATTCTGGGAACTTCAGGGAACTACTTTCAAGATCCCAACAGTGGAAAGAAAAAGTTTAGACCTTTTTCGCCTACACAAGACGGTAAATGAGGAAGGAGGATTTGAGTTCATAACCAGGAAGAAGAAATGGTCAATTGTGGCGAGAAAGATGGGATACCACATCGGGAAGTCGGCACCATCTCTTTTGCGTATGAATTATGAACGGTACCTTTACCCCTATGATATTTTTCAAGCAGGAGCATTCACAGGGGATCCACAGTCTCAGAATTCTGAAAGCAAGAAAGATGACAAAGATAAGGATTACTTTCCACATAATTCACCTAACACAAATTACCAAATGTCCAGGAGATCCAAAAAAACTAGAGCAGAGGAGCTTGAAGCAATAGACTTTGAGAACAACCCAGAGTTGAAAAAGTTGCAGTTCCTTGCCCCAGGGCCTAAAATGGCAGGGCTGACAAAAGAACCTGATGATAGCCCATTGAAAATGGAAACTGATTCTCAACACAGAAGTGAACAATGTCCTGGTAAAACCAAGTTGCCGGTACATGTAACAGACAACATTTTACCCTGTCCAAGCAAACAGAAAAGGCAGAGGCAAAATGTGAAAGCTAAGCTTGAGAATTTATCGCAGCTGAAAGAACACGAATTCACAAGAAGAAGACCAGTGAGAAGGGCCAGCAGGAAAAACTATTTTCCAGACACACTTATTGTCTTTGATGAATACCTTTGTCAAGTGTGCAGCAAAGGTGACTCTGAAGAAAGCATGCTTCTCTGTGATGGCTGTGATGACAGTTACCATATCTACTGCCTGATTCCACCATTATCATCTGTACCTCGTGGAGACTGGAGGTGTCCAAGATGTGTTGCAGAAGAGTGTAACAAACCTGTTGAAGCATTTGGGTTTGAGCAAGCCAAGCGAGAATACACACTGCAGTCGTTTGGAGAGATGGCTGATAACTTCAAAAGGGAATATTTCAAAGTTCCACCAGAGCAGGTTCCCACTGAGATAGTGGAGAGGGAATTCTGGAGGCTTGTGTCCTCAATGGATGAAGATGTAACTGTCGAGTATGGTGCTGATCTGCACACAGCAACCCATGGCAGTGGATTCCCACGTCAATATAATGCTGTTACAAGCGAAGAAGAGTTTTATGCCAAATCAGGCTGGAATCTCAATAACCTTGCAAACTTGGAAAGATCTGTTCTGTCACACATCAGTGCTGATATTTCAGGAATGAAGGTTCCTTGGATTTATGTTGGCATGTGTTTCAGTAGTTTTTGCTGGCACAATGAAGATCACTGGAGCTATTCAATAAACTACATGCACTGGGGTGAGCCAAAGACATGGTATGGTGTGCCAGGAGAATGTGCGGTAGATTTTGAGAAAGCGATAAAAGAAGCAGCACCAGAGCTGTTTGAAGCTCAACCTGATCTTCTTCATCAACTTGTCACGATTATCAATCCAAATGCACTTACTGCCAACGGTGTCCCTGTGGTGAGAACAAACCAGTATGCTGGTGAATTTATTGTTACCTTTCCAAGGGCTTACCATGCTGGATTCAATCACGGTCTGAACTTAGCTGAGGCTGTCAATTTTGCCACTGCAGACTGGCTCCCAATTGGACGCAAGTGTATTGATCACTACCGTGAAATGGCAAGAAATCCTGTATTTTCACACGAGGAACTGGTTTGTAAAATGGCTGCCGATCCTGATGGGTTGGATCTTGACCTGGCCAAAGCAGTTTATGATGAAATGTTGGCTGTTGTTGAGAGGGAAGCTAAGCGCAGACACTATTTAAAAAGAATGGGAATTTCAGAGTATGAAAGAGGTGAAGCATTTGAGTTGCTGCCTGATGATGAGAGACAATGTACAGTGTGCAAAACCACTTGTTTTCTGTCCGCTGTACAGTGTTCTTGTAGTCCAGGTAAACTCATGTGCTTAGACTGTGTCTCGGAGCTGTGCTCCTGTGAATCCTCAGAAAAGAGTTTGAGATATCGTTACACTCTTCACGAGCTTCCCTCTATGCTGTTACGCCTGAAGAGAAGGGCTGACTCGTTTGATAACTGGGCTACCGAAGTCAAGCGAGCCCTAGATCCCTCAGATCCTAGAGTTGATGTATCAGAGCTCAAGTATCTGGTGACCACTGCTGAGCAAAGTCAGTTCCCTGACTGTGATTTGTTTCAGCAACTCAAAGCTGCAGTGGCAGAAGCTGAACGCTGTGCTAGTGTTGCGTTACAGCTTGTGAGCAGAAAACACAGAACTAGGCCTCACAGTGGTGCAGACACCGCTCCATCGACTCGCTTGAGCCTTGATGAACTGCAAGGTTTTATGCAACAGCTACAGAACCTGCCTTGCGTTGTAAGGGAGGCAGATTTGGTACAAGAACTCATGACACATGTAGAGAGTTTTCAGTGTGAAGCACAGAAGGTGATACAGAGCAGTACAACTGATGTAACTAGATTACAACAACTCTTAGATAATGGACATACACTGGACGTTGACTTACCTGAAATACCAAAACTCAAACAGGAATTGCGGTTGGCAAAGTGGCTGGAACAAGTAAATGCTACCTTAGTCAACACGGAAGAAGTCTCCTTTGATACCTTGCAAGAATTACTTGAAACCGGGAACTCACTTCCACAGAAAAAAGCAATAGAGAAAGCAGTTGGTGAGCTTCGTGCACTAGTGTCACTGGGTGAGCGCTGGGAAGAAAAGGCTAAACTGTGTCTTCAAGCGAGACCACGTCACGTGATGGCCACAGTAGAGGCTATTATTCAAGAGGCGTCTCGCGTGCCACTGTACCTTCCAAACGTGAGTGCCCTCAAAGAAGCACTCCGCAAGGCTCGTGAATGGTCTGACAAGGTCGATCAGGTTCAGAATGATGATTACTATCCTTACCTCGACGTACTGGAGTCCCTGGTTATGCGAGGCAGACCCATTCCTGTGCGTCTAGAACAGCTTCCTCAAATGGAGTCCCAAGTGGCGGCGGCACGGGCTTGGAGGGACCGTGCAGCACGGACGTTTCTCAAGAAAAACTCGACAACATGTCTCTTGGAGATCTTGTCTCCGCGGAAAGACGTCGGATTGCACAAGGCTTGTCCAAAGCCTCGCAAGAAACGGGAAAAAGAGAAAGAAAAAGAAAAAGAGAAAGAAATTATAATCGACCTCGTTGCTTTAGACGATTATATCGGCAGAGATCCTGCTTTACAGATCGCCGAGTTTCGAGAAACGGAGAGAAAAGAGATTGAGGCCATGAGGCAACTTCGCGAAGCAAATATTCAGAGGCAAAAAGAGGAAGACAATAAACGTAAACTTGGCGAAAGCTTGGAAGGGCAGTATTGTATCTGTCGGCGTGGACCAGACGGCTTCATGTTACAGTGTGAACTATGCAAAGAATGGTATCACAGTTCATGTGTACCCCTCCCACGCACGCAGGGTGGTAAAGCGATGAGCAAAAGCACAGCGGCAATGGAAGCGGCAAAGGAGCTCAAGTATCTGTGCCCACTGTGTTTGAGATCCAGGAGACCTCGCCTGGAGACCATCCTTTCTTTGCTGGTATCATTACAAAAGCTGCCTGTGCGTCTCCCTGAAGGAGAGGCTCTGCAGTTTCTAACTGAAAGAGCAATGAACTGGCAAGATCGCTCTCGGCAGTATCTTGCCGATGAAAACGTGGTCTCATTGCTTGCGGCTATAAGTAGGAATTCCACAAGCTGGCCTCAAGGTGTAAGTGCCGAGAATTTGTCAGCTTCTGCTGCGTTGCTTCGTCTCGCGCAAGGAGGTCCTCAAGAAGAGGATACGAGTAAACTCGCTTCTAGCGATGTGTCAGTCACAGATGCGAATATTCCGAGTCCAGCCGAAGTAAGACCGACGTTGTCCGAAGAGAACCGAAGACAAGCTGAAGTTTTGATGATGGAAGGAGATTTGCTGGAAGTGTCACTTGATGAAATCGAGCAGCTGTGGAAAGTGTTGCTCAGTCAGAAAAACCGCGAAGAAAACGAGACAAAGGTTTTTGAAGTAAAATCAGACAAGGAGAAAGTGAAGAGAAAACGCAAAAAGAAAGACGACGAGAAAGACAAAGACAAGGCAGCAAAGAGATCTTCGAACGCCACAGCAAATGCAAGCACAGCAAATGGCACTGAAACGGAAACTCCAAAGAAACGCAGAAGAAAGGAAAAAGAAAAGGTGACCAAAGTGAAACGAGAGGAGATGGTGGACGTTGAAGAAGACGATGATGATGATGACGAGATCTGCGCAGCACCTTCATGTACTAAACCACAAGGTGATGAAGTGGGTTGGGTACAGTGCGATACCTGTGAAAAATGGTATCATCTTGCTTGCGTGGGACTGAGCCCAGAGAAAGCAGAAGCTATGGATTCTTACAATTGCAAAACATGCACTGGAGAAGGATCCTCTACAAACTCGGCTGTAGGAACACCAGTGCCTGCCTCGCCGGAGTCTGAGAATATTGATGTGGGTGGGACCACGCCTTCTGCCACTAGTCCCAGCTCACCAAGCCCGCCGGGCTGTTTAGTGGATGTGGAAAGCACGGATGCCGTTCATCAACAAGAAAATGCGGAGATCGAAACAAGTCCTGTATCTGTTACCTGCGAAAAGCCTTCCTTGGTGACTACGATCGATCTGTGTTCGGATAACGAAGAAGATATGGAAGCGGAAGTTGATGTGGAAACGGAACAAAGAGAACATCCGTAA

Transcript

rna-XM_068902542.1

AGATGATTTGTCGATTTTAAAAATGGCGTTGTTGTGTGGGAAATGCGAGtcctttgttttgaaatggTTGGTTGTGCTCTGACGCGACAGCAATCATGGAGGACGAAGGGGAAGAGTTCATTTTCAACCCACCTCCAGAAGCTCCTGTCTTCGAACCCACGGAGGAAGAATTCCAGGACCCTTTGGCTTACATTGCAAAGATAAGGCCGTATGCAGAGAAAACTGGCATTTGCAAGATTCGACCTCCACCGGAGTGGCAGCCCCCTTTTTCAGTAGATGTGGAAAGTTTTAGGTTTACACCAAGGGTTCAGCGTCTGAATGAACTAGAGGCAAGGACAAGGGTCAAACTCAACTTTTTGGATAGCCTTGCCAAATTCTGGGAACTTCAGGGAACTACTTTCAAGATCCCAACAgtggaaagaaaaagtttagaCCTTTTTCGCCTACACAAGACGGTAAATGAGGAAGGAGGATTTGAGTTCATAACCAGGAAGAAGAAATGGTCAATTGTGGCGAGAAAGATGGGATACCACATCGGGAAGTCGGCACCATCTCTTTTGCGTATGAATTATGAACGGTACCTTTACCCCTATGATATTTTTCAAGCAGGAGCATTCACAGGGGATCCACAGTCTCAGAATTCTGAAAGCAAGAAAGATGACAAAGATAAGGATTACTTTCCACATAATTCACCTAACACAAATTACCAAATGTCCAGGAGATCCAAAAAAACTAGAGCAGAGGAGctTGAAGCAATAGACTTTGAGAACAACCCAGAGTTGAAAAAGTTGCAGTTCCTTGCCCCAGGGCCTAAAATGGCAGGGCTGACAAAAGAACCtgatgatagcccattgaaaaTGGAAACTGATTCTCAACACAGAAGTGAACAATGTCCTGGTAAAACCAAGTTGCCGGTACATGTAACAGACAACATTTTACCCTGTCCAAGCAAACAGAAAAGGCAGAGGCAAAATGTGAAAGCTAAGCTTGAGAATTTATCGCAGCTGAAAGAACACGAATTCACAAGAAGAAGACCAGTGAGAAGGGCCAGCAGGAAAAACTATTTTCCAGACACACTTATTGTCTTTGATGAATACCTTTGTCAAGTGTGCAGCAAAGGTGACTCTGAAGAAAGCATGCTTCTCTGTGATGGCTGTGATGACAGTTACCATATCTACTGCCTGATTCCACCATTATCATCTGTACCTCGTGGAGACTGGAGGTGTCCAAGATGTGTTGCAGAAGAGTGTAACAAACCTGTTGAAGCATTTGGGTTTGAGCAAGCCAAGCGAGAATACAcactgcagtcgtttggagagATGGCTGATAACTTCAAAAGGGAATATTTCAAAGTTCCACCAGAGCAGGTTCCCACTGAGATAGTGGAGAGGGAATTCTGGAGGCTTGTGTCCTCAATGGATGAAGATGTAACTGTCGAGTATGGTGCTGATCTGCACACAGCAACCCATGGCAGTGGATTCCCACGTCAATATAATGCTGTTACAAGCGAAGAAGAGTTTTATGCCAAATCAGGCTGGAATCTCAATAACCTTGCAAACTTGGAAAGATCTGTTCTGTCACACATCAGTGCTGATATTTCAGGAATGAAGGTTCCTTGGATTTATGTTGGCATGTGTTTCAGTAGTTTTTGCTGGCACAATGAAGATCACTGGAGCTATTCAATAAACTACATGCACTGGGGTGAGCCAAAGACATGGTATGGTGTGCCAGGAGAATGTGCGGTAGATTTTGAGAAAGCGATAAAAGAAGCAGCACCAGAGCTGTTTGAAGCTCAACCTGATCTTCTTCATCAACTTGTCACGATTATCAATCCAAATGCACTTACTGCCAACGGTGTCCCTGTGGTGAGAACAAACCAGTATGCTGGTGAATTTATTGTTACCTTTCCAAGGGCTTACCATGCTGGATTCAATCACGGTCTGAACTTAGCTGAGGCTGTCAATTTTGCCACTGCAGACTGGCTCCCAATTGGACGCAAGTGTATTGATCACTACCGTGAAATGGCAAGAAATCCTGTATTTTCACACGAGGAACTGGTTTGTAAAATGGCTGCCGATCCTGATGGGTTGGATCTTGACCTGGCCAAAGCAGTTTATGATGAAATGTTGGCTGTTGTTGAGAGGGAAGCTAAGCGCAGACACTATTTAAAAAGAATGGGAATTTCAGAGTATGAAAGAGGTGAAGCATTTGAGTTGCTGCCTGATGATGAGAGACAATGTACAGTGTGCAAAACCACTTGTTTTCTGTCCGCTGTACAGTGTTCTTGTAGTCCAGgtaaACTCATGTGCTTAGACTGTGTCTCGGAGCTGTGCTCCTGTGAATCCTCAGAAAAGAGTTTGAGATATCGTTACACTCTTCACGAGCTTCCCTCTATGCTGTTACGCCTGAAGAGAAGGGCTGACTCGTTTGATAACTGGGCTACCGAAGTCAAGCGAGCCCTAGATCCCTCAGATCCTAGAGTTGATGTATCAGAGCTCAAGTATCTGGTGACCACTGCTGAGCAAAGTCAGTTCCCTGACTGTGATTTGTTTCAGCAACTCAAAGCTGCAGTGGCAGAAGCTGAACGCTGTGCTAGTGTTGCGTTACAGCTTGTGAGCAGAAAACACAGAACTAGGCCTCACAGTGGTGCAGACACCGCTCCATCGACTCGCTTGAGCCTTGATGAACTGCAAGGTTTTATGCAACAGCTACAGAACCTGCCTTGCGTTGTAAGGGAGGCAGATTTGGTACAAGAACTCATGACACATGTAGAGAGTTTTCAGTGTGAAGCACAGAAGGTGATACAGAGCAGTACAACTGATGTAACTAGATTACAACAACTCTTAGATAATGGACATACACTGGACGTTGACTTACCTGAAATACCAAAACTCAAACAGGAATTGCGGTTGGCAAAGTGGCTGGAACAAGTAAATGCTACCTTAGTCAACACGGAAGAAGTCTCCTTTGATACCTTGCAAGAATTACTTGAAACCGGGAACTCACTTCCACAGAAAAAAGcAATAGAGAAAGCAGTTGGTGAGCTTCGTGCACTAGTGTCACTGGGTGAGCGCTGGGAAGAAAAGGCTAAACTGTGTCTTCAAGCGAGACCACGTCACGTGATGGCCACAGTAGAGGCTATTATTCAAGAGGCGTCTCGCGTGCCACTGTACCTTCCAAACGTGAGTGCCCTCAAAGAAGCACTCCGCAAGGCTCGTGAATGGTCTGACAAGGTCGATCAGGTTCAGAATGATGATTACTATCCTTACCTCGACGTACTGGAGTCCCTGGTTATGCGAGGCAGACCCATTCCTGTGCGTCTAGAACAGCTTCCTCAAATGGAGTCCCAAGTGGCGGCGGCACGGGCTTGGAGGGACCGTGCAGCACGGACGTTTCTCAAGAAAAACTCGACAACATGTCTCTTGGAGATCTTGTCTCCGCGGAAAGACGTCGGATTGCACAAGGCTTGTCCAAAGCCTCGCAAGAAAcgggaaaaagagaaagaaaaagaaaaagagaaagaaattaTAATCGACCTCGTTGCTTTAGACGATTATATCGGCAGAGATCCTGCTTTACAGATCGCCGAGTTTCGAGAAACGGAGAGAAAAGAGATTGAGGCCATGAGGCAACTTCGCGAAGCAAATATTCAGAGGCAAAAAGAGGAAGACAATAAACGTAAACTTGGCGAAAGCTTGGAAGGGCAGTATTGTATCTGTCGGCGTGGACCAGACGGCTTCATGTTACAGTGTGAACTATGCAAAGAATGGTATCACAGTTCATGTGTACCCCTCCCACGCACGCAGGGTGGTAAAGCGATGAGCAAAAGCACAGCGGCAATGGAAGCGGCAAAGGAGCTCAAGTATCTGTGCCCACTGTGTTTGAGATCCAGGAGACCTCGCCTGGAGACCATCCTTTCTTTGCTGGTATCATTACAAAAGCTGCCTGTGCGTCTCCCTGAAGGAGAGGCTCTGCAGTTTCTAACTGAAAGAGCAATGAACTGGCAAGATCGCTCTCGGCAGTATCTTGCCGATGAAAACGTGGTCTCATTGCTTGCGGCTATAAGTAGGAATTCCACAAGCTGGCCTCAAGGTGTAAGTGCCGAGAATTTGTCAGCTTCTGCTGCGTTGCTTCGTCTCGCGCAAGGAGGTCCTCAAGAAGAGGATACGAGTAAACTCGCTTCTAGCGATGTGTCAGTCACAGATGCGAATATTCCGAGTCCAGCCGAAGTAAGACCGACGTTGTCCGAAGAGAACCGAAGACAAGCTGAAGTTTTGATGATGGAAGGAGATTTGCTGGAAGTGTCACTTGATGAAATCGAGCAGCTGTGGAAAGTGTTGCTCAGTCAGAAAAACCGCGAAGAAAACGAGACAAAGGTTTTTGAAGTAAAATCAGACAAGGAGAAAGTGAAGAGAAAACGCAAAAAGAAAGACGACGAGAAAGACAAAGACAAGGCAGCAAAGAGATCTTCGAACGCCACAGCAAATGCAAGCACAGCAAATGGCACTGAAACGGAAACTCCAAAGAAACgcagaagaaaggaaaaagaaaaggtgACCAAAGTGAAACGAGAGGAGATGGTGGACGTTGAAgaagacgatgatgatgatgacgagatCTGCGCAGCACCTTCATGTACTAAACCACAAGGTGATGAAGTGGGTTGGGTACAGTGCGATACCTGTGAAAAATGGTATCATCTTGCTTGCGTGGGACTGAGCCCAGAGAAAGCAGAAGCTATGGATTCTTACAATTGCAAAACATGCACTGGAGAAGGATCCTCTACAAACTCGGCTGTAGGAACACCAGTGCCTGCCTCGCCGGAGTCTGAGAATATTGATGTGGGTGGGACCACGCCTTCTGCCACTAGTCCCAGCTCACCAAGCCCGCCGGGCTGTTTAGTGGATGTGGAAAGCACGGATGCCGTTCATCAACAAGAAAATGCGGAGATCGAAACAAGTCCTGTATCTGTTACCTGCGAAAAGCCTTCCTTGGTGACTACGATCGATCTGTGTTCGGATAACGAAGAAGATATGGAAGCGGAAGTTGATGTGGAAACGGAACAAAGAGAACATCCGtaatgaacaattttaattaacTTGCATCAAATAATTATCGCTTTGtaatgaacaaaacaagaatatttttgCAGGGATTAATCTTGCATCTCCCCGAAGTTTATACACGAACGCTGTGCCTTTTGCAAGCAAGTTTTTGTAGGTGTCTATTCACGGTGGTGAAGATGAATAATGTACGATGCTCAGACCAACCAGGTTAAGAGTTGGTGGTACAAATTTTGCGTGACGTCTCAGCCCAGGTCATGGCTCTGACCTTTAGAATCTATCCGACATTATTACCTCCAATTGCAATGATTAACACGTGTTCCGGTGAAAAGATGTTCTCTGTGTATGTTTAACTTATTGAAGCATCTATCTGAGATTCTGTCAACAGTTGTATCCAATAGTTTGCTTTGCCACAAGTCTCCATTTGTGGGTTGGCATGGAACTCTTCTTCCACCGGGACATTATGCTTCGTGGAGGCAAGGCTAATGCCTTCGTTTCAAACTGGGTTAGCGGGCTAAACACAAAGACAAGATGATTCTGGTAGGCACGCTTTTGCCGTGCGCTTAAGCCCTCATGTCACGCTATGCCCGCCTCATGAGGAAGTGGCCAAACCCTTACCATTTCATTGTTAGAAGGTAACTCGGATCTTGCGCGgtttcattaaaaacaaaaattaatctgCGTTAAATGATGTTTTGGGAACTTTAAGACTTCTGATTCACTTAACAAGCTGCACAGCGAAGTTAAGATGACAGCGATATAGTCGCATCCACTTAAGCGGAGAAATGTTGTTGTAGGTCAAAGTTATTCTAgctttttgtccttctttgtcTTTCAGTTGAACGATAGCGATAACGCTACACAGTTGCCATCAACAGAATTTAGCTTATTTATATATGCTTGTAAATAATTCTCTTAAGTCGTTTATGAATTTCCTCAGTCGCATTCTGTCGTTGGCGCAGTCTACGGAATCACCAAAGGTATTACTAGTTCTATATGAAAAGCAGGTAGTTTACCACCGTCAATCCCACTTGTAAGCCCTCAGGTATTTAATTCATGTGAATAAAATATTGGAAAGAATTAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P29375	Lysine-specific demethylase 5A OS=Homo sapiens OX=9606 GN=KDM5A PE=1 SV=3
Q3UXZ9	Lysine-specific demethylase 5A OS=Mus musculus OX=10090 GN=Kdm5a PE=1 SV=2
P41230	Lysine-specific demethylase 5C OS=Mus musculus OX=10090 GN=Kdm5c PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004118 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF02375 all species →	JmjN	jmjN domain	Family	Interproscan
PF01388 all species →	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan
PF02373 all species →	JmjC	JmjC domain, hydroxylase	Domain	Interproscan
PF02928 all species →	zf-C5HC2	C5HC2 zinc finger	Domain	Interproscan
PF21323 all species →	KDM5_C-hel	Lysine-specific demethylase 5, C-terminal helical domain	Domain	Interproscan
PF08429 all species →	PLU-1	PLU-1-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan
IPR036431 all species →	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR003349 all species →	Domain	JmjN domain	Interproscan
IPR047970 all species →	Domain	Lysine-specific demethylase 5A, second PHD finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR004198 all species →	Domain	Zinc finger, C5HC2-type	Interproscan
IPR048615 all species →	Domain	Lysine-specific demethylase 5, C-terminal helical domain	Interproscan
IPR013637 all species →	Domain	Lysine-specific demethylase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10694 all species →	LYSINE-SPECIFIC DEMETHYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0032452 all species →	Molecular Function	histone demethylase activity	Interproscan
GO:0034647 all species →	Molecular Function	histone H3K4me/H3K4me2/H3K4me3 demethylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11446	KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase	EC:1.14.11.67	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068758643.1 across 36 RNA-seq samples of Montipora capricornis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

0TPM > 0

1Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.