Gene detail

Detailed information of XP_068758652.1 in Montipora capricornis

Genomic Location: chr7:27471915...27492246
NR annotation: XP_015761842.1, PREDICTED: lysine-specific demethylase 7A-like [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138056696

ATGGCAGAGACAAACAACATGGCGGATCCTTTGTATTGTATTTGTAGACAAACGTACGATCCGTCCCAGTTTATGATACAGTGCGATTCATGTGAGGAATGGTTTCATGGAAGTTGTGTAGGCATTGAGGAGTATCAGGCTTCTGACATTGAACGGTACCATTGCCCGCATTGTGCGCTACTGTACGGACCACTGACTTTAAAAAAACGAAGGAACTGGCATCGCCATGACTACAGTGAAATTGATGATGGTTCAAAGGCTGTACAGGCTGGGACAGTGGCATTTATTAAAGAATTGAAAACACGGAAATTTAAAGAAGGCAATGTTGTTCTAAAGCTTGAAAATGGCAAGGACCTTACTGTGGAGAGTTTTGAGAAGAATGGCTTTAACAGGCCAATACTCATTGCAGACAAGGAAGGATTGGGAATGGTTGTTCCTGACAAGAACTTCAGTGTTATGGATGTTGAGAGATGTGTTGGTTCAATGAGAGAGTTGGATGTCATAGATGTTTGTAGGCAGGAAGATCAGCGCATGCGAATGAGGGAATGGACAGAGTATTATATGAATCCAGTCAAAAGGAAAATTCTGAATGTTATTAGCTTGGAGTTCTCTAATACAAGCATGACACACCTTATACGTGCTCCAGCCTTTGTAAGAGAAATGGACTGGGCAAATCATGTATGGCCTTCAGATCTCCCAGAAGATGCCCCGCACAAGAAACCCCTTGTTCAGAAATATTGCTTGATGGGTGTAAAAAATTCATACACAGACTTCCATGTTGATTTTGGTGGTACATCAGTCTGGTATCATGTTTTGAAGGGAGAGAAAGTGTTCTACTTTGTTGAGCCAAGTGAGGAAAGCTTTAAACGATATGAAAAGTGGGTATCGTCTGCAAGACAGAGCGAGATGTTTTTTGGTGATATGGTAAAGCAGTGCTTCAAATGTTCAGTGAAGCCTGGACAAACTTTATTGATTCCCACAGGTTGGATTCATGCGGTTTTTACTCCTCTTGACTCGCTCGTATTTGGAGGAAATTTTCTCTGCACATACAACATTGAACTTCAACTCAGAGTGTACAGGCTGGAGAGACAACTCAAAACACCTGACAAATTTCTTCATCCGTGTTTTGAGACAATGAATTGGTATGCTGCTGTGTATCTGTTGGACAAACTTAAAGCTGTTCTTGAGTCAGGCAGGAAACCATCAGACAGTCTGATTAAAGGATTAAATGCCCTTGTTGTTGCACTCAAGGCGTGGAGCACAAAAGGAGAAGAGTTGACAAAACTGCACAAGTTTTTCATTCCAGACACAGTGTCTCCAAGCAAGTTCATCAAGTCCATCTATAAAGAACTGAAAAAGACAGAGAAATCAGACAAGACATCAAGACCCTCAACTCCAAAACTTGATGAAAATAATCAAAGAGACAATGGAAGCCCAATGCCATCCTCCTTTGTTGATGGAAGTTTACCGCGCCTCAAAATTAAAGCTCCAAAATCTGACAATTACAGTACTCATAATGCAAATAATTCTGGAGATCATCTGAGATGTGAGCTTGATGACAGTAAACCTGTTATTAGAATAGCTAATACAGGAATTGATTCTAAACGAAAAGCTGATTCCTTTTCCTCGAGTTTGCCGGCACTGAAACTCAAGATTCCTCGAACACAGGAGCCACAGGAACCTGGTTTGGATTTTAGTGGAGGCAAGGGTCAGATCTGTGAGTCCGCTAATTCTAGCTTGAAGCTTGTTGTTTCGAATGGAAAGATTGTCAGCAACAACAATAACAATAATCGTAGCAGTAGAAAAACGACAGGAAAGAAGTTCCAGCCTCTCGTGCCCCAGGCTACTCAGGAAGACAGTAACCTCATGGATAGCTCGTATTCTTGTTCACCTTCTAAGCAAGGTCCGCTTCGCCTTAAACTATCAATGAACAGCTCATCAAACAAGAACAAAGCATTCTTCCCATTAGACCCAACAGAAAGTAATAGCGACACATCTGACAATGAACTTGGTTACAGCCTGGGTGGAACACCTAGCCTCATTCCTGTTCATTCACGAACCACACAAGGTAGCATAGGAGCAACATCTGGTCTCCAGGCCACATCAGACCCTCGAACACAGCAGCCCGTGGCTGGGTTAGACTGGACCTCATCTAAAGATTATAAGGACGAAATTGAAGCAGCAAAAACACTGCTATTTGGCTTAAGTGCTGGAGCTGGAATCAATGCGTTTGGCTCATCAGCCTTTCAATCTGTATCCAATGCAAAACCCAAGTCATCTAGTTTTCAGTTGTCTCAAGCAGCAAACCAACCAAGTACCTCTCAGTTGAACTCAAAACGAGCCCCAAGCGAGAGCAATTCTGAAAGCGAAGAGGATGACCTGGGATTCGGTGACTCAGATTATTTTCACGACAATAAATATGTTTATCCACCTCTTGCTGACATGACAGATGAGGACAAAGCCACCTCCTGGAAACCAGGACAACGCAAGAAGAAAAGCGAAAGGGTCGACTCAACTTGGAATCCAAAGAGTAAACTGCTTTGTTCACCAGCGAAGGAATTCAGACCTGTCCGTCAAGCCTCGAGACGAAACACCGCTGGTAGTTTATTGAACTCACCACTGGACGAAACTCCACCCACGGGACCATTAACTTCCGAAAGAAGTGCACAAGTTAGCGACCAAACAAGCACAGGCGGAAGTAAGACAGCAGCTGTCAACGGAGGTGAAACGCTTGCTGCATCCAGTTTAAAACCAAACTGTGCGAAACCCGATAATACCATTAAAGCGCAAGCAAAACGAGGACGACAGAAAGCCGTCACTACCACTAAACAGCGTCTTGCGAAAATCCTCAAGTTAGACAAAAGCGGACGATACATGAGATAA

Transcript

rna-XM_068902551.1

tataaTGGCAGAGACAAACAACATGGCGGATCCTTTGTATTGTATTTGTAGACAAACGTACGATCCGTCCCAGTTTATGATACAGTGCGATTCATGTGAGGAATGGTTTCATGGAAGTTGTGTAGGCATTGAGGAGTATCAGGCTTCTGACATTGAACGGTACCATTGCCCGCATTGTGCGCTACTGTACGGACCACTGACTTTAAAAAAACGAAGGAACTGGCATCGCCATGACTACAGTGAAATTGATGATGGTTCAAAGGCTGTACAGGCTGGGACAGTGGCATTTATTAAAGAATTGAAAACACGGAAATTTAAaGAAGGCAATGTTGTTCTAAAGCTTGAAAATGGCAAGGACCTTACTGTGGAGAGTTTTGAGAAGAATGGCTTTAACAGGCCAATACTCATTGCAGACAAGGAAGGATTGGGAATGGTTGTTCCTGACAAGAACTTCAGTGTTATGGATGTTGAGAGATGTGTTGGTTCAATGAGAGAGTTGGATGTCATAGATGTTTGTAGGCAGGAAGATCAGCGCATGCGAATGAGGGAATGGACAGAGTATTATATGAATCCagtcaaaaggaaaattctgaATGTTATTAGCTTGGAGTTCTCTAATACAagCATGACACACCTTATACGTGCTCCAGCCTTTGTAAGAGAAATGGACTGGGCAAATCATGTATGGCCTTCAGATCTCCCAGAAGATGCCCCGCACAAGAAACCCCTTGTTCAGAAATATTGCTTGATGGGTGTAAAAAATTCATACACAGACTTCCATGTTGATTTTGGTGGTACATCAGTCTGGTATCATGTTTTGAAGGGAGAGAAAGTGTTCTACTTTGTTGAGCCAAGTGAGGAAAGCTTTAAACGATATGAAAAGTGGGTATCGTCTGCAAGACAGAGCGAGATGTTTTTTGGTGATATGGTAAAGCAGTGCTTCAAATGTTCAGTGAAGCCTGGACAAACTTTATTGATTCCCACagGTTGGATTCATGCGGTTTTTACTCCTCTTGACTCGCTCGTATTTGGAGGAAATTTTCTCTGCACATACAACATTGAACTTCAACTCAGAGTGTACAGGCTGGAGAGACAACTCAAAACACCTGACAAATTTCTTCATCCGTGTTTTGAGACAATGAATTGGTATGCTGCTGTGTATCTGTTGGACAAACTTAAAGCTGTTCTTGAGTCAGGCAGGAAACCATCAGACAGTCTGATTAAAGGATTAAATGCCCTTGTTGTTGCACTCAAGGCGTGGAGCACAAAAGGAGAAGAGTTGACAAAACTGCACAAGTTTTTCATTCCAGACACAGTGTCTCCAAGCAAGTTCATCAAGTCCATCTATAAAGAACTGAAAAAGACAGAGAAATCAGACAAGACATCAAGACCCTCAACTCCAAAACTTGATGAAAATAATCAAAGAGACAATGGAAGCCCAATGCCATCCTCCTTTGTTGATGGAAGTTTACCGCGCCTCAAAATTAAAGCTCCAAAATCTGACAATTACAGTACTCATAATGCAAATAATTCTGGAGATCATCTGAGATGTGAGCTTGATGACAGTAAACCTGTTATTAGAATAGCTAATACAGGAATTGATTCTAAACGAAAAGCTGATTCCTTTTCCTCGAGTTTGCCGGCACTGAAACTCAAGATTCCTCGAACACAGGAGCCACAGGAACCTGGTTTGGATTTTAGTGGAGGCAAGGGTCAGATCTGTGAGTCCGCTAATTCTAGCTTGAAGCTTGTTGTTTCGAATGGAAAGATTGTCAGcaacaacaataacaataatcgTAGCAGTAGAAAAACGACAGGAAAGAAGTTCCAGCCTCTCGTGCCCCAGGCTACTCAGGAAGACAGTAACCTCATGGATAGCTCGTATTCTTGTTCACCTTCTAAGCAAGGTCCGCTTCGCCTTAAACTATCAAtgaacaGCTCATCAAACAAGAACAAAGCATTCTTCCCATTAGACCCAACAGAAAGTAATAGCGACACATCTGACAATGAACTTGGTTACAGCCTGGGTGGAACACCTAGCCTCATTCCTGTTCATTCACGAACCACACAAGGTAGCATAGGAGCAACATCTGGTCTCCAGGCCACATCAGACCCTCGAACACAGCAGCCCGTGGCTGGGTTAGACTGGACCTCATCTAAAGATTATAAGGACGAAATTGAAGCAGCAAAAACACTGCTATTTGGCTTAAGTGCTGGAGCTGGAATCAATGCGTTTGGCTCATCAGCCTTTCAATCTGTATCCAATGCAAAACCCAAGTCATCTAGTTTTCAGTTGTCTCAAGCAGCAAACCAACCAAGTACCTCTCAGTTGAACTCAAAACGAGCCCCAAGCGAGAGCAATTCTGAAAGCGAAGAGGATGACCTGGGATTCGGTGACTCAGATTATTTTCACGACAATAAATATGTTTATCCACCTCTTGCTGACATGACAGATGAGGACAAAGCCACCTCCTGGAAACCAGGACAACGCAAGAAGAAAAGCGAAAGGGTCGACTCAACTTGGAATCCAAAGAGTAAACTGCTTTGTTCACCAGCGAAGGAATTCAGACCTGTCCGTCAAGCCTCGAGACGAAACACCGCTGGTAGTTTATTGAACTCACCACTGGACGAAACTCCACCCACGGGACCATTAACTTCCGAAAGAAGTGCACAAGTTAGCGACCAAACAAGCACAGGCGGAAGTAAGACAGCAGCTGTCAACGGAGGTGAAACGCTTGCTGCATCCAGTTTAAAACCAAACTGTGCGAAACCCGATAATACCATTAAAGCGCAAGCAAAACGAGGACGACAGAAAGCCGTCACTACCACTAAACAGCGTCTTGCGAAAATCCTCAAGTTAGACAAAAGCGGACGATACATGAGATAACTTAACACGACAATCCCTCCGGGAagagaataggccattttttaATCGTTGTTTTCTTAGTGACCTGGCGTCTGACTAGCGacgaggctgccagtgaccttGTATCAATACAGACCTCGCCGCTTTTATCACGTAAATCATCGTTGTTAAAAGCATGAGAAAGATGAGAAGTTTGTATGACAGTAAGGTCACTGGCAATCTCACCCATAACTGAAAACTGAtccaagttgttcaaaaggtgtatGAATCCAGCAGATAAATCTCTACCCAACAGACAAGTGCTGTCAGAAGCGATCGCGATCGTAGTttatttatccagtggatggcTCTTTTCACCCTTCGAGCAATTAGGACCCATTTCTGGAGAGTCTCGAAACGTCTCTTGTGTCATACTGCATCTTAAAAACGAAAAGGGTTAAATAATCAAACTTCAAAGCCGTTATTGTGCTCTTTGTTGCCTTGAAAGCATGTAAAAAGACTAGTCTTTCGTAACAAGCGGATGACAGGTTCTGTTCtggctttttgggcccgaaaagttatcgggactgtCTAGAATCGGATCCCTGGCCTCAGTTGTGCACAAGAGCTCGGTTGCTCAAACGGTGGATAACACAACCCACCGGATAAACTGCTTTCAGACTGATAGCCACTGTGGAAGCTTATCGAATTTATTTACTGTTGAGTGAATCCACCTTCTGAACCAAGGTGTTCCCAAAGTATCCACCACGCCCCAATTGCTCAAAGGCCGATTAATTTCATCCCTTGGATAAGTCACAGTTTCACTTTGTGCAAAGATCTCAGCACTTGTTCGCGTaattgaatatgcactctatgCACACTTGACTTTCTTTGAGCGACGAAGTCGTGAGAAGGCAGTACCCAACCAGCCGTCACTTGGCGGCGCCAAGTAACGGCTTGTTGGGTACTGCcttctcgcgacttcgtcgcccGTTCACGACCTCACTTCAAGCTCGCTTCGCTCGCTTTGCTCGCTTTAATTTCTCAATCGAAGAGTTTCGAGAGGGCAACTTGGAGCAAGTCTATAAGCACACCTGAGTAAAGGTGTGTTCGAAAACCCTGGCCAACGTTTTATGTGAGGTACCGGTATATTTTATtctctggatagtgacttacctactggataaagttatctaacctttgaacaactgatttatccggtgatttaagtgatttatccggcagatGGCGATATCCAccggttaaggacggtgcctactaattcagaggtgtttttgcgcggttttatgaatatgcgggaaaagcagatctcaacaagtgtcgttaaaatccaaaaagaaaattgggggtaaccacgcatttttcaaagataattaatcaacaatattagcaaaaagctttaaaatacaaagcaatgtatggcgttcctttccaaattaaagctaaattatctttgaaaaatgcatggctacccccagttttctttttggataccaagagcccttgctaagttcttctttctccgcataaatttaaaccgcgcaaaaatatccctgcattagtaaacactaccgataggaaatccgagtatccggagatgcgcagaacgtatgcgcaataacaatagtaggcaccgtccttaaatcactATTCAACGGATAAGTTAAATAAGAAGCAATTGCGTTGTCCAATCTTTGAACAACTAGGGTCTTGTCTAAAGGTTGTCAGTTCTGTGGGACAATTACACAtcaacttaatttaatttttatcgCCTTTTCTAGCATTCTATTCCCTGAAGTAATTTCCAAAAGTAAGAAGTATTTGAAAGGAGTTTATTCCCCGATCAGTTGCTTTTATCGGAGAGGCCAGAAGTGTCCATGATTGCTTATCAAACAATCATTCAGGAAGAATATTTTTATCTCACTATCAGTTTTCGCCTGTTTGTTGTGGGTCataacaacctcgttcccagggtctctcgtcTCTGCCTCATTTGTCAGGACGCAGAGCAGAGagtccctgggaacgaggttgcgaaGAGGACCGATATCTCTTTCCTTGATATTATTTTTGAAGTGCAAATTCCCCATATCACTGTCCATGTAGTACCGGTTTCTCGGGTATTTTTCTActcaagaaaattttaaatGGGAATAAGAATTTTACTTGGTTATGATCATAATTTTCGCGCTAGGTGGGGAATTCGAGTTAAATGCGAATATCTTCACGAAAGCTCGGCGCGCGACCCATCAGGTTGTCAGCGAGTGAAAGGAAACCACAttggccactttcaaaaataccataatactctttgtttgccctccaaaatttttcGTAAGCATTTTTCGTTCCTTTGGACCatttaagtcccaagagaaagttAAAACAATtctggagggcaaacaaagagtgttgtggtatttttgaaagtggccaaCGCTTGCTTAGTCATTCAATTGTGTTCTTGTGTAATTCATTGGAAAGGAATGATAAGTAAAAAGGACAAAAGTCACGGTGGGAACCTCACTTGGGTATATTGTAAAGACCTAGCTTATGCCAAATCAAAACATGTCTAGCGGTTAAGAATGGCTTATTTAATGGTATTTATCGTATATTTATGAGCGTATATACAACTTGTAAACTCTTTGCAAAACGTGCTTTCGATAACAGTCTTACGCGTTGCGTGTCAATAAACAAGTGTTTTGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZMT4	Lysine-specific demethylase 7A OS=Homo sapiens OX=9606 GN=KDM7A PE=1 SV=2
Q08D35	Lysine-specific demethylase 7A OS=Xenopus tropicalis OX=8364 GN=kdm7a PE=2 SV=1
Q3UWM4	Lysine-specific demethylase 7A OS=Mus musculus OX=10090 GN=Kdm7a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001471 (this species only)
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF17811 all species →	JHD	Jumonji helical domain	Domain	Interproscan
PF02373 all species →	JmjC	JmjC domain, hydroxylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR050690 all species →	Family	JHDM1 Histone Demethylase	Interproscan
IPR041070 all species →	Domain	Jumonji, helical domain	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23123 all species →	PHD/F-BOX CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006482 all species →	Biological Process	protein demethylation	Interproscan
GO:0032452 all species →	Molecular Function	histone demethylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068758652.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068758652.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

12.5Max TPM

3.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	3.84	12.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	12.47
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	12.36
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	9.51
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	8.50
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	7.84
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	7.66
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	7.64
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	7.08
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	7.06
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	6.21
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	5.81
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	5.62
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	5.13
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	4.84
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	4.58
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	3.78
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	3.47
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	2.94
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	2.81
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	2.73
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	2.52
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	2.49
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.18
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.04
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.98
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.81
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.73
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.51
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.