Gene detail

Detailed information of XP_068758656.1 in Montipora capricornis

Genomic Location: chr7:27112853...27130560
NR annotation: XP_029205154.1, IQ motif and SEC7 domain-containing protein 1-like isoform X2 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138056699

ATGAGTTCTCTACAGTCAACTTTAGAAGCTTTGACAAGTGTTGACTCTTTGGTTGGTACTTTAAAAGCTTGTATTTGGAAGCAAGATAAAATAATACGAGAGCAGAAAGAAGAAATTGAAACGTTGAAGAAAATTGTGAAAGAATTGGATAAGGAACGAAGAGAACTTCGCAGCCAGATCGCAAATGAAAGAAACAATGGTTCCACTTCTATAAACACTGATGGGTCAAACGCAGCGGTTGAAAGAGACGGAAATGAAGATTCTGAAGGGCCTTCAATGTCTACATCTAAAGAAAATCCTTTAAGTGAAGAAGGTGGAAGCACACTAGAGGTAAACTTTTCCCCAGAGCATCTGAAGTCCCCTGAAATTACAGTGACTACAGAGAATGGTTATCCTGTGCAATACTCACCACAGGAATCTCCAGGAGGGACACCCAAACTTGAAAGTAAGGAAACTTACAAGCCTGTGAAAAGGAATGACAGTATAACACGGCAAAAGTCATTCAATCGAAAATATGAATTAAGTCCTGACCTTCAAGACAGAAATGTGAGGATCCTTGAGCGTCAGTATGGAGGAAAAGAGACAGCTCACCAGGCAGCCAGAGTTATCCAGTCCTATTATCGCAAATACAGGATGGACAAGCAATTCAAAAGGATGCGTACATACTCTGGAAATGACTCGAATAGAAAAAAGACTAATACTGACCCTTATTCTGAAGCAAAGACTTTGAGCCCTCAACCCCGAAATGCTGGAAGTCAAGTTACACCAGTATTACGAATTAAAACGAAACCTGGTGGTGATCAAAGAGTCAAGTCAATTCTTATTATAGATAATATCAACAACCAAAGTGGAGGAGAACCGCAGATGTACACCGGCGAAGATCTGCCGACAGATCTGACTTCTATATTCACTAGACTTGAAAATAAAGACTCTGAAAATGAGCAAACACAAGCTAGAGATGAAAAGAGAGACTTGAGGCTTGCTAGTGTCACCAATGAAACAGAACACTATGTCAAAGTTGAGATTGTGGATAATGTAGGGTCTCCACCAGAAGCATTTCATGGGGATACCAATGGTAGTTGGAAAGTTCCTAATGGAGATTTAACCAGAAGACAGCGGAAAGGAACTGTTGATGAAGATGGTTCCTTATATGGGAGTGATGACTCAGGCGATGACATGAGCAGAAGAGACGTGAGCAGTGTGGACAGTTATGATGGTGTCTGTGCTTCATCAGGACCACCAAGCAATGATGATGACACATTGAGCATCTACTCTGATTTTGAACTCAAACCACAGAAGCTAGAGATGAGAATTGGTATAAACCATTTTAACAGAAAGCCAGAAAAAGGAATAAACTACCTTGTTACTCACCAAGTCTTGGAGGATGATCCTGAAATGATAGCAAGGTTCCTTTTGACAGAGCAAGGCATCAGCAAACAGAAACTCGGAGAGTACCTTGGAAACCTACAAAATGAGTTTAACATGGAAGTATTGAAGTGCTTTGTTCAAGCACTAGACTTAACAGGAATGGAAGTCGATGAAGCTCTCAGACTCTTCCAAACTCGCTTCATTTTGCCCGGTGAAGCCCAAAAAATTGAGCGACTCATGCAGGAGTTTGCCGAGCAGTACGTGAGCTGTAATCCATCCTCAGAGCAGGGTGCAGTTGATGCTATTCTCATTTTATCGTTTGCCATTGTGATGTTAAATACTGACCTGCACAGTCCAAATGTCAAAAGGCGCATGACTGAAGAGCAATTCATCAATAACTTAAAAGGTACAAACAATGGTGGAGACTTTCCAGAAGAAAGCCTGCTAGGAATCTACAGCAGAATAAAAAAGAAGGCCTTTGTCACTGGTAAGGACCATGTTAGCGTGGTTGCGAAGCTAAGCAAGAAAATTGTTGGAACAAAATCACCTTGGACGACATTGGCAGCTCTTCACAGACAACTGAGAATGTTAACCCCTTTGTACAATGTGCGTGATCCGGACAAGAAAGAAAAACCACACCCAAGGACCATCTTCCTTTTTAATGACATGCTAGTTGCTTGCAAGGAGCGTGGCAGAGCTGGTCGTGGAGAAGGAATTCACTATTACAGCTACAAGCATTCATTCTCCTTGTGTGGACTGAAGGTTACCACATTCTCCAATGACTACTACCAGTTTGGAATCCAGGTTTACTCAAAGCTGGATAGTCGGGTCTTGGCTTTTTTCAATGCAAGGGATGACCAAACAAGAAAGGTGTTCCTTGAAGAACTTGAGGACTGTGTAGAGGAGACAAATGAAATGGAAAGTGACAGGATAACCACTGAAAAGCAAAAGCATCTTGGAGCAAGATTCAACAGATCAGGGATGGACCTCAGCCGGGCATCACTTACAATCCCAAAGAAGATAAAGAAACCCTCCCATGACACCATTAGTTTGATTGACAGTGGAAGTTCTATAGAGTCACTGAATTCAGCTGGTCTGTTTGGATCCAAGCAGCTGTCAAGCTCAATGTTAAACATAAGTGAAGGTGGAGAATTTACATCTGAGCTCAAGAAAAGCAGTAGTATATCCTCACTGGACAGTGCTTTTACAGATGGGCTTGTAAATGGAGTTCCTGGAAAGGTTGAAAAACATGGAGGCAAGTTTAAAAGGGATAAAGGAAAACACAAAAAAGCAGAATCCAAACACAGCAAGTCTAGAATTCTTCTTTCTGTCAGATTCTGA

Transcript

rna-XM_068902555.1

TTCGGCCGCGAAAGTCCCACGGAtgtaaacaaaatggcggggAGTTGAGGGACCGCAAATGGGTACGATGTCTGGTTCGAAAGTTCAATTTCTTGTTTTCATTCTCTTATTTTCAGGATGAGTTCTCTACAGTCAACTTTAGAAGCTTTGACAAGTGTTGACTCTTTGGTTGGTACTTTAAAAGCTTGTATTTGGAAGCAAGATAAAATAATACGAGagcagaaagaagaaattgaaacgttgaagaaaattgtgaaaGAATTGGATAAGGAACGAAGAGAACTTCGCAGCCAGATCGCAAATGAAAGAAACAATGGTTCCACTTCTATAAACACTGATGGGTCAAACGCAGCGGTTGAAAGAGACGGAAATGAAGATTCTGAAGGGCCTTCAATGTCTACATCTAAAGAAAATCCTTTAAGTGAAGAAGGTGGAAGCACACTAGAGGTAAACTTTTCCCCAGAGCATCTGAAGTCCCCTGAAATTACAGTGACTACAGAGAATGGTTATCCTGTGCAATACTCACCACAGGAATCTCCAGGAGGGACACCCAAACTTGAAAGTAAGGAAACTTACAAGCCTGTGAAAAGGAATGACAGTATAACACGGCAAAAGTCATtcaatcgaaaatatgaattaAGTCCTGACCTTCAAGACAGAAATGTGAGGATCCTTGAGCGTCAGTATGGAGGAAAAGAGACAGCTCACCAGGCAGCCAGAGTTATCCAGTCCTATTATCGCAAATACAGGATGGACAAGCAATTCAAAAGGATGCGTACATACTCTGGAAATGACTCGAATAGAAAAAAGACTAATACTGACCCTTATTCTGAAGCAAAGACTTTGAGCCCTCAACCCCGAAATGCTGGAAGTCAAGTTACACCAGTATTACGAATTAAAACGAAACCTGGTGGTGATCAAAGAGTCAAGTCAATTCTTATTATAGATAATATCAACAACCAAAGTGGAGGAGAACCGCAGATGTACACCGGCGAAGATCTGCCGACAGATCTGACTTCTATATTCACTAGACTTGAAAATAAAGACTCTGAAAATGAGCAAACACAAGCTAGAGATGAAAAGAGAGACTTGAGGCTTGCTAGTGTCACCAATGAAACAGAACACTATGTCAAAGTTGAGATTGTGGATAATGTAGGGTCTCCACCAGAAGCATTTCATGGGGATACCAATGGTAGTTGGAAAGTTCCTAATGGAGATTTAACCAGAAGACAGCGGAAAGGAACTGTTGATGAAGATGGTTCCTTATATGGGAGTGATGACTCAGGCGATGACATGAGCAGAAGAGACGTGAGCAGTGTGGACAGTTATGATGGTGTCTGTGCTTCATCAGGACCACCAAGCAATGATGATGACACATTGAGCATCTACTCTGATTTTGAACTCAAACCACAGAAGCTAGAGATGAGAATTGGTATAAACCATTTTAACAGAAAGCCAGAAAAAGGAATAAACTACCTTGTTACTCACCAAGTCTTGGAGGATGATCCTGAAATGATAGCAAGGTTCCTTTTGACAGAGCAAGGCATCAGCAAACAGAAACTCGGAGAGTACCTTGGAAACCTACAAAATGAGTTTAACATGGAAGTATTGAAGTGCTTTGTTCAAGCACTAGACTTAACAGGAATGGAAGTCGATGAAGCTCTCAGACTCTTCCAAACTCGCTTCATTTTGCCCGGTGAAGCCCAAAAAATTGAGCGACTCATGCAGGAGTTTGCCGAGCAGTACGTGAGCTGTAATCCATCCTCAGAGCAGGGTGCAGTTGATGCTATTCTCATTTTATCGTTTGCCATTGTGATGTTAAATACTGACCTGCACAGTCCAAATGTCAAAAGGCGCATGACTGAAGAGCAATTCATCAATAACTTAAAAGgTACAAACAATGGTGGAGACTTTCCAGAAGAAAGCCTGCTAGGAATCTACAGCAGAATAAAAAAGAAGGCCTTTGTCACTGGTAAGGACCATGTTAGCGTGGTTGCGAAGCTAAGCAAGAAAATTGTTGGAACAAAATCACCTTGGACgACATTGGCAGCTCTTCACAGACAACTGAGAATGTTAACCCCTTTGTACAATGTGCGTGATCCggacaagaaagaaaaaccacaCCCAAGGACCATCTTCCTTTTTAATGACATGCTAGTTGCTTGCAAGGAGCGTGGCAGAGCTGGTCGTGGAGAAGGAATTCACTATTACAGCTACAAGCATTCATTCTCCTTGTGTGGACTGAAGGTTACCACATTCTCCAATGACTACTACCAGTTTGGAATCCAGGTTTACTCAAAGCTGGATAGTCGGGTCTTGGCTTTTTTCAATGCAAGGGATGACCAAACAAGAAAGGTGTTCCTTGAAGAACTTGAGGACTGTGTAGAGGAGACAAATGAAATGGAAAGTGACAGGATAACCACTGAAAAGCAAAAGCATCTTGGAGCAAGATTCAACAGATCAGGGATGGACCTCAGCCGGGCATCACTTACAATCCCAAAGAAGATAAAGAAACCCTCCCATGACACCATTAGTTTGATTGACAGTGGAAGTTCTATAGAGTCACTGAATTCAGCTGGTCTGTTTGGATCCAAGCAGCTGTCAAGCTCAATGTTAAACATAAGTGAAGGTGGAGAATTTACATCTGAGCTCAAGAAAAGCAGTAGTATATCCTCACTGGACAGTGCTTTTACAGATGGGCTTGTAAATGGAGTTCCTGGAAAGGTTGAAAAACATGGAGGCAAGTTTAAAAGGGATAaaggaaaacacaaaaaagCAGAATCCAAACACAGCAAGTCTAGAATTCTTCTTTCTGTCAGATTCTGATCAAACAATCTCGGAACATTTTCAAAGGCTACATACACCTCTTACGCGAAAAGGATTATTTGGAATAAAATGGCCGCAGAGGCACAGTTCTAAGACCTTGCCAAGACGATCTTCACCAAAATTGAGCCCAATTGCTGTTCCAACAGAGAGAATGGTCGCAACTCCATGAGGACAATGATCCCGATGTGTCAATTTCAAACAAGTCATTATCTCAATTTGAAGGGTTactcctttcttgtttttgtgTACTTCATTCCAAAATGACGTGCTCTTTATGATAACTTTCTTTGCATTCATATCACAAATCAGCCCTTTCTTATTTATAATTTCCCTTTGAATTTAGTATTTTATTTGTTCTGAGGTTCATGTAGCAGATTTGGGAATAAGGGTGCAAGATTATCATTTTACATGGCAGGATTATAACTAATGATTATTCATACAGCTTTTTGTTATGTTCTTCCCTGTCAACAACCATAACATTAACATTGTTACTGTATTAGTATGATCATcaataatttgcatttaaaaTACTGAACATACTTATCCATGACTTGGTTCTCATTATACATGCCATGAAATTATCAGTATCATCATTGTTAAGCTGGTAACACACGGTTCAACTTTTGtcgatcaacaaatgttgaacagtgtgccATGTCACGTTGAAATATATCATTCCATACATTGAATGTTGTTGAACGAAAATGGAGACCAGCTCTATTCTGTTCAACACATCTGTgcaacatttttcaacatttgttgagcaacaacatgttttaagatgttgaACTGTGTCATCTGCTTAAAGgtgcagtgtcacgctattttaggcaaaCTTCAAAACCCTAAgcgacgtctttgcatcaatgaagaccaaaaaatgaTGATGTAGGGTTGTTACCAATAACCACTGAaatgcactgaagctattctttgttgtttacggccaaggatggagaggatggaaatggattgaaacttgaaaaaactggctagttttttcaagtttggagacgacGTCTTCAGAAAatcaccaaaaattaaataagaatagaactttgtgccataaatacaaTGCATATCTAGTCCGTTGGATGTCAAGAATGTTAGCTAATGTTGCACGTGTGAGCTTAAATGCTAacttagatttttacccagttttgacataaaaacagcaaatttagcatgacagtggcCCTTTAAATACTGTTGGTGGtcacaataatattgttgtttagATGATGCATGTAACACATTTAGTAGCCAAGGAAGAGTATGATTAAAGATGCTCAGTTAGAAGGCCTTGATATGAAAGTGACTGGCTTTTTCCATAAGGCTCTGTAGTATTGAATGGTAGTGTCTTGTGATATTTTCTAGTATACACGTTACACGTCATTATCATCTTTGGTACACACTGCAAGTAGTTTTGAAGGAAGTATTTAAGGTGACTCCATATGGCATGAAATTCTTTAGCACTTAAGTATGGCATGTATAGTTCTTTATCGACTGtgagcagtcccttcataaatcagtcaagcagcccgcttttctgaggcagtcgtgttttttatttgtttgcatgacaaaacacaactgcctcagaaaagcgggccgctcgaATGATTTAGGAAGGGACTGCTCTCAGTCTAAGTTCTTTAGTAATTATTTTGCAGACTTTGATCTTGCACAAACAGTTGTCACAATAACAAGAATTTCCTAATCTTTTGCCATACAGTGGGTTTGATTACCAGctgctgtttcgggaaatgagccagcgctcactcctgTATGAGTGGCGCAAATCGAGCCTAGCCATACAGTGGAGTTGATAATGGTTATCACAAGCTTAGTTGAAATAAGACAAAATTATAGCCTTCCTCAGATAATGGAGATATAAAAAATCTATTATATACTGCTTGAATTTTGTTCATATTTTTTGGATGACTTCAAGTATTTGGGATTAAAATACACCGTAGCACTGATTGTAGTGCATTCACTGAAACCGGGCCCACCCAGATAATGAAAACCATTCGGAAGGCAGAGCTGAAACAATAGATTCCAACATTTTCAGATGTCcaatacaaaacaatgaaattgcAACTTGTTCGTTGAACGGTGATGCTCTAGTGACTCTAGTGTTAATGTAAATTATCTAGGTGGCCCCGGTTTCAGTGAAAACAGTGACCGAAACAATCCAATATATATTTCTGAAAAAAGGCATTCTATGGATTATATCTCCCTTTAAGTCCATTTTAAGACATTAATGTTCACAACAGCTTCTGAAAATAGGTCTGCTTTTGTGAAATTGTGTGTGGAATGACAGCTGTAAGTGTTGCAAAGAAAAAGTATCGCTGCTGAAGAGAGAACTTAGACTGTCGCTGTTTTTGGATTTTGCACATTTCACAGAGTGTCTGGGACACAGACTGATTTCATAATGGTCACAACTGTGTAATTTTAACTCTCagcacaaaaaaacaaacctaATATCAGTCATTTCAATCATTACAGTCACTTCTCAAACATTCCTTTGACTGTTTAAAGGAACAgaattcatttattttacaCAGGTAGATTAAATTTATCAATGTCAAATTAGATTATTGAAAAGGAAGGATGAAGAAATAGAAATTTTGCATCAGTAGAAATCTATTTTTGCATGGATGCgctattttaaatttgtacaTAAATAATTGGGCTCACCTTTGGTAACATAATCAGGAAGGAgcaacattcattttgaagCAGACATTCTGCATTTCCATGGTTTATTacattaaatgaataaaaagaaataataaggGTTACAACACTCAATAAAAGGCTTTGAATTAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R0S2	IQ motif and SEC7 domain-containing protein 1 OS=Mus musculus OX=10090 GN=Iqsec1 PE=1 SV=2
A0A0G2JUG7	IQ motif and SEC7 domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Iqsec1 PE=1 SV=1
Q6DN90	IQ motif and SEC7 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=IQSEC1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003061 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16453 all species →	IQ_SEC7_PH	PH domain	Domain	Interproscan
PF01369 all species →	Sec7	Sec7 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023394 all species →	Homologous_superfamily	Sec7, C-terminal domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000904 all species →	Domain	Sec7 domain	Interproscan
IPR035999 all species →	Homologous_superfamily	Sec7 domain superfamily	Interproscan
IPR033742 all species →	Domain	IQ motif and SEC7 domain-containing protein, PH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10663 all species →	GUANYL-NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0032012 all species →	Biological Process	regulation of ARF protein signal transduction	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12495	IQSEC; IQ motif and SEC7 domain-containing protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068758656.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

44.1Max TPM

21.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	21.82	44.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	44.06
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	43.82
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	42.68
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	42.62
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	40.64
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	39.45
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	30.70
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	30.62
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	29.26
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	26.69
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	26.43
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	25.51
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	24.02
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	23.87
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	23.81
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	23.51
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	22.92
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	22.58
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	22.45
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	22.37
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	21.03
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	20.84
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	20.80
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	20.29
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	17.99
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	16.94
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	16.79
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	16.70
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	13.97
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	11.98
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.