Gene detail

Detailed information of XP_068758907.1 in Montipora capricornis

Genomic Location: chr7:30910315...30937892
NR annotation: XP_029192906.2, LOW QUALITY PROTEIN: alpha-aminoadipic semialdehyde synthase, mitochondrial-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138056879

ATGTGGACTGTAAAAAGGCGGACACCAAATGCGTATGGAAACTTCTTTCGAATTTTGTGGCGTTTGCAACAAGCGAAGTTCACAACAGAGAAAACAGAGCGCGCAATGGCGATTAGGCGGGAAGATATCAATGTATGGGAACGACGAGCTCCGATCGCACCTTCACATGTAGCTGAACTTGTTAACAAGGGAATAAAAGTGCTTGTACAGCCTTCTACACGCCGTGCTTACACCATGGACGAATACGAGAGGGCAGGAGGCGTGATCACAGAGGATTTATCGCCTGCAAGTTTAATTATTGGCGTAAAAGCTGTCCCAATCGACTTGCTTATACCAAACAAGACTTACGCGTTCTTTTCGCACACGATAAAAGCACAAGAGGCTAATATGCCGCTTTTGGATGCAATGTTGGAAAAGAATATTCGACTTGTTGACTATGAGAAGATGGTGGATGCTAAAGGCCAAAGAGTTTGTGCCTTTGGCAAGTTTGCCGGAGTTGGAGGAATGATTAATATTCTTCACGGACTTGGACTCAGGCTTTTAGCTCTTGGTCATCACACACCATTTATGTACATGGGTGCAACCCATAATTATAAGAACAGCAGAGCAGCCAAATTGGCCATCTATGAACTTGGAGAGGACATCAGGGGTGGAAAATTACCAGCACATTTTGGACCTTTGTCATTTGTCTTCACTGGTTCAGGAAACGTCTCCCAGGGAGCTCAGGAAATGTTTCAAGAACTTCCTCACATCTATGTTGAACCTGATGAATTGAAAAAGGCAATTCAGAGCACTGATCATCGCAAAGTTATCGGTACGGTAGTGAGTCGTGAAGACTACCTTGTACCTAAAGCTGGAGGTGGCATTTTTGATGCAGAGGAATATGATGCACATCCAGATAGATACAGGTCTACATTTGCTGAAAAGATTGCACCTTACATGAGTGTTCTGGTAAACGGCACCTACTGGGCTCCTCACGTTCCACGCCTTCTTACTTATGGTGATGCAAGAAATTTGCTAAGGACAATGAAGAGATCAAGTGCATATGAAGGCTGTCCTAGCCTTCCACAAAGATTACTGGCCATTTGCGACATATCTGCAGATTGTGATGGTTCTTTAGAATTCATGACTGAGTGTACTACAATCGAATATCCATTTCACTTATACAATATTAAGTCAGGCACCTCGCAGATTGGAATGGCTGGTGATGGAGTTCTCATTTGCTCCATTGATAATCTTCCTGCTCAGTTGCCACGAGAAGCCACAGATTATTTTGGCAAATTGTTGGTACCATGGCTGCAGGAAATGATTGATTCACATGCAACAGCTCCATTTGAAGAACAGCATCACTTGTCAGACACGGTTAGGAATGCCATTATTACTTCAAATGGGGAGCTTACACCAAGCTACGAATACATTGCCGATTTGAGAAAAAGCCAAGAAGAAGCCAAAGCTCGGGCATTAGGACCAAACGTGACCATACCAGTCAAACAAAAGGTCCTTTTGCTTGGGTCTGGGTTTACTGTGGCACCGTGTGTTGAGTATCTGACAAAGGACAAGAGTGTTGCCGTCACAATCGCCTCTGATCAGATCAGTGAGGCGGAAATTTTAGCTTCCAAATATAAGAACACGTATCCAACTCTACTTGACGTCACACATTCGGAAGACAAGTTGAACAGATTGATTCAGCAACATGATGTGGTTATAAGTTTACTACCTTATTCCTTGCATCACGTTGTTGCAAAGTGTTGTATCGCCCATAAAAAGAACTTGTTGACTACGAGTTATGTGCTTCCCCAAATACAAGAATTACACCAAAGCGCGGTTGATGCTGGAGTAGCAATTGTGAACGAAGTGGGACTGGATCCTGGTATCGATCATTTGCTAGCGATGGAATGCTTTGATGACTCGAAGGACGAGGGTGCAGTGATAAAATCATTTCGTTCATATTGTGGTGGCCTTCCTGCTCCGGAGCATGCCGATAATCCTCTTAGATATAAGTTCAGCTGGAGTCCAAGAGCTGGTCTTCTTACCATCATGAACACTGCCAAATATCTCTGGTATGGAAAGACTGTCGAAATAGCAGCGGGTGGCGCTTTACTTAAAGAAATCAAACCTACGGACATGTTTCCGGGCTACAGGCTGGAATGCCATCCGAACAGGGACTCGATTATATACGGCGAACTATACGGCATTGCCACAGCCAACACGATACTGCGAGGGACCCTGCGATATGAGGGTTATGCGACAGCGTGTTTAGCTTTATTTCAACTTGGAATGTACAGTCAGGCTGAACGATCAGACCTTGCCGTGGCCCAAGAACAACCTTGGAAAAAAGTCTTGGCCAAACTTGTGGGCAGACCTGACGCGGGTGATTCAGAGCTCCAATCGGTTGTGTTTGATTTGGTTGGAAAAGACTCGGTCCGCATGCAGGCCATAAAGGACCTTGGACTTCTTTCGGAAGAGCCTGTTCTGCAACACAAGACTCCTTTGGACACGCTTTGTTTGTATCTCACTGACAAACTCGCTTACAGAGAAGGTGAGCGAGACATGGTTTTACTTCAACATGATATTGAATTGGAGATGCCTGACAAATCACAGCTTAACCGTCGAATTGACTTAATTTGTTACGGTGATCCGAATGGTCATTCAGCCATGGCGCGCACTGTTGGGCTTCCTGTGGCGATTGCGACCAAGATGGTGCTAGACGGAGACTTAAAAGCTACTGGCGTGGTCCGACCCCTGAATCGTGAAATTTATAAACCGATGCTCACACGACTCAAAGCCGAAGGAATTTACAGCGAATTGACCTCAACGGTGTTATGA

Transcript

rna-XM_068902806.1

TATCTACATCTTCCGGTGGCGATCTATTTTACATCGTGGCTCTGTTTCCATAAACTTGACCATGTGGACTGTAAAAAGGCGGACACCAAATGCGTATGGAAACTTCTTTCGAATTTTGTGGCGTTTGCAACAAGCGAAGTTCACAACAGAGAAAACAGAGCGCGCAATGGCGATTAGGCGGGAAGATATCAATGTATGGGAACGACGAGCTCCGATCGCACCTTCACATGTAGCTGAACTTGTTAACAAGGGAATAAAAGTGCTTGTACAGCCTTCTACACGCCGTGCTTACACCATGGACGAATACGAGAGGGCAGGAGGCGTGATCACAGAGGATTTATCGCCTGCAAGTTTAATTATTGGCGTAAAAGCTGTCCCAATCGACTTGCTTATACCAAACAAGACTTACGCGTTCTTTTCGCACACGATAAAAGCACAAGAGGCTAATATGCCGCTTTTGGATGCAATGTTGGAAAAGAATATTCGACTTGTTGACTATGAGAAGATGGTGGATGCTAAAGGCCAAAGAGTTTGTGCCTTTGGCAAGTTTGCCGGAGTTGGAGGAATGATTAATATTCTTCACGGACTTGGACTCAGGCTTTTAGCTCTTGGTCATCACACACCATTTATGTACATGGGTGCAACCCATAATTATAAGAACAGCAGAGCAGCCAAATTGGCCATCTATGAACTTGGAGAGGACATCAGGGGTGGAAAATTACCAGCACATTTTGGACCTTTGTCATTTGTCTTCACTGGTTCAGGAAACGTCTCCCAGGGAGCTCAGGAAATGTTTCAAGAACTTCCTCACATCTATGTTGAACCTGATGAATTGAAAAAGGCAATTCAGAGCACTgATCATCGCAAAGTTATCGGTACGGTAGTGAGTCGTGAAGACTACCTTGTACCTAAAGCTGGAGGTGGCATTTTTGATGCAGAGGAATATGATGCACATCCAGATAGATACAGGTCTACATTTGCTGAAAAGATTGCACCTTACATGAGTGTTCTGGTAAACGGCACCTACTGGGCTCCTCACGTTCCACGCCTTCTTACTTATGGTGATGCAAGAAATTTGCTAAGGACAATGAAGAGATCAAGTGCATATGAAGGCTGTCCTAGCCTTCCACAAAGATTACTGGCCATTTGCGACATATCTGCAGATTGTGATGGTTCTTTAGAATTCATGACTGAGTGTACTACAATCGAATATCCATTTCACTTATACAATATTAAGTCAGGCACCTCGCAGATTGGAATGGCTGGTGATGGAGTTCTCATTTGCTCCATTGATAATCTTCCTGCTCAGTTGCCACGAGAAGCCACAGATTATTTTGGCAAATTGTTGGTACCATGGCTGCAGGAAATGATTGATTCACATGCAACAGCTCCATTTGAAGAACAGCATCACTTGTCAGACACGGTTAGGAATGCCATTATTACTTCAAATGGGGAGCTTACACCAAGCTACGAATACATTGCCGATTTGAGAAAAAGCCAAGAAGAAGCCAAAGCTCGGGCATTAGGACCAAACGTGACCATACCAGTCAAACAAAAGGTCCTTTTGCTTGGGTCTGGGTTTACTGTGGCACCGTGTGTTGAGTATCTGACAAAGGACAAGAGTGTTGCCGTCACAATCGCCTCTGATCAGATCAGTGAGGCGGAAATTTTAGCTTCCAAATATAAGAACACGTATCCAACTCTACTTGACGTCACACATTCGGAAGACAAGTTGAACAGATTGATTCAGCAACATGATGTGGTTAtaagTTTACTACCTTATTCCTTGCATCACGTTGTTGCAAAGTGTTGTATCGCCCATAAAAAGAACTTGTTGACTACGAGTTATGTGCTTCCCCAAATACAAGAATTACACCAAAGCGCGGTTGATGCTGGAGTAGCAATTGTGAACGAAGTGGGACTGGATCCTGGTATCGATCATTTGCTAGCGATGGAATGCTTTGATGACTCGAAGGACGAGGGTGCAGTGATAAAATCATTTCGTTCATATTGTGGTGGCCTTCCTGCTCCGGAGCATGCCGATAATCCTCTTAGATATAAGTTCAGCTGGAGTCCAAGAGCTGGTCTTCTTACCATCATGAACACTGCCAAATATCTCTGGTATGGAAAGACTGTCGAAATAGCAGCGGGTGGCGCTTTACTTAAAGAAATCAAACCTACGGACATGTTTCCGGGCTACAGGCTGGAATGCCATCCGAACAGGGACTCGATTATATACGGCGAACTATACGGCATTGCCACAGCCAACACGATACTGCGAGGGACCCTGCGATATGAGGGTTATGCGACAGCGTGTTTAGCTTTATTTCAACTTGGAATGTACAGTCAGGCTGAACGATCAGACCTTGCCGTGGCCCAAGAACAACCTTGGAAAAAAGTCTTGGCCAAACTTGTGGGCAGACCTGACGCGGGTGATTCAGAGCTCCAATCGGTTGTGTTTGATTTGGTTGGAAAAGACTcggtccgcatgcaggccataAAGGACCTTGGACTTCTTTCGGAAGAGCCTGTTCTGCAACACAAGACTCCTTTGGACACGCTTTGTTTGTATCTCACTGACAAACTCGCTTACAGAGAAGGTGAGCGAGACATGGTTTTACTTCAACATGATATTGAATTGGAGATGCCTGACAAATCACAGCTTAACCGTCGAATTGACTTAATTTGTTACGGTGATCCGAATGGTCATTCAGCCATGGCGCGCACTGTTGGGCTTCCTGTGGCGATTGCGACCAAGATGGTGCTAGACGGAGACTTAAAAGCTACTGGCGTGGTCCGACCCCTGAATCGTGAAATTTATAAACCGATGCTCACACGACTCAAAGCCGAAGGAATTTACAGCGAATTGACCTCAACGGTGTTATGAGGCGAATAGATGAGGAAGGAGGAGAATGGGTTGCTCACTTGCCCACATTAGCGCCATACGTCGATGTACAAACCATCTGTCTAGGAGTGAACACGTTTCATAGTGGTACCTTTGACAAGATGCAAGGGGTGTTAAATGCCCTCTTGCATGGCGGAGGCCTTTTTGCATCTTTCGCCTTAATTAACTTCCCAATGTTCTACTTGGAGTTTTGACGTCAAGACAAGTCAAGATTGTCGAGGGGTGGAAACATCGGAGGAATCTTGCAAAAATTGCAGTCTTTTTACGAGTAATATCCGACAAGTGAAGTATTTAAACATGTTAAAATTTCCAACTTATAATTCGAAATGGAGGAAATATAATCTAAGGTATTCTTCAATCAAAGACTGAATCTGAAGACACCTCTTCAGTAATTCAGACCTTTGAATAGAGGAATACTCTTTTCGTTCGTTTCAGTTGAGTCGACGCCTCTAACCAGTTTATTGGACTCACTGTTTTGAAATCACCTTTTTTTAAATGACGTATTTATTTTACTAAGAGAATTTTTCACATTCACGTCGCAATATTACAGAAGTTAATACCGCGacaagtaagaatttcttcaaaTATTACTTGCAATTAGAGATGCGCGCATGCTTTGATTGGGAATAAATTACGTACTAGTTTACTTCTAACCGCCTTGCGCGGAATTAAtgcaataattaattttttgctgCGCGCTTTCTTGATGTCCTTGAAGTATTCAAGAATATGCAGTTGCTTTGATAATTACCTCAGTACACTTCCTGAAAAATTCTTGTTAGGTTCGTGCAAaggaaatgataatgataatagaGTTTAAACAATTATTTGAGTTCTAGCCCCAATGGCTGAATTGGCGTATATTGGTTTTTATTATTTGGAAGACGCATTTGATGATGTCTTTTTCCAATGTTCACTTCGCCTCGGTGAAGAAATGTTTAACAGGGGGCCACTTCCTTGTAGCTGCTGGAATAATcacatttgtaaatattacCACGATATGATGTGACCAGTCTTCCGGCACTCGTGCTATTTATTCTTTTAAGAAAGCTCATTTCTCATCTATTTGCTATCTATATAAGAAGTTGGCTTTCAGTTATTACAGCTGCCGGCAGTTTGAAAACCAGTATCTTCCTCAGTTCCGCTTTGGGTAACTAATGATCATATAGTTCGGGACTGAATAAATGCTCTGACTTCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8E657	Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Bos taurus OX=9913 GN=AASS PE=2 SV=1
Q99K67	Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Mus musculus OX=10090 GN=Aass PE=1 SV=1
Q9UDR5	Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Homo sapiens OX=9606 GN=AASS PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003890 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16653 all species →	Sacchrp_dh_C	Saccharopine dehydrogenase C-terminal domain	Domain	Interproscan
PF05222 all species →	AlaDh_PNT_N	Alanine dehydrogenase/PNT, N-terminal domain	Domain	Interproscan
PF03435 all species →	Sacchrp_dh_NADP	Saccharopine dehydrogenase NADP binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032095 all species →	Domain	Saccharopine dehydrogenase-like, C-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR007886 all species →	Domain	Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal	Interproscan
IPR051168 all species →	Family	Alpha-aminoadipic semialdehyde synthase	Interproscan
IPR007698 all species →	Domain	Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain	Interproscan
IPR005097 all species →	Domain	Saccharopine dehydrogenase, NADP binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11133 all species →	SACCHAROPINE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004753 all species →	Molecular Function	saccharopine dehydrogenase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019878 all species →	Biological Process	lysine biosynthetic process via aminoadipic acid	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14157	AASS; alpha-aminoadipic semialdehyde synthase	EC:1.5.1.8 EC:1.5.1.9	Lysine degradation	ko00310	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068758907.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

7.4Max TPM

2.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	2.09	7.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	7.39
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	7.06
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	7.02
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	5.31
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	5.03
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	4.77
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	4.68
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	4.58
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	4.31
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	2.38
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	2.12
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	1.96
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	1.90
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	1.88
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	1.83
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	1.69
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	1.48
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	1.47
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	1.45
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	1.26
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.26
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	1.22
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.99
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	0.94
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.72
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.35
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.30
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.