Gene detail

Detailed information of XP_068759045.1 in Montipora capricornis

Genomic Location: chr7:32084084...32102548
NR annotation: B8VIW9.1, RecName: Full=Fibronectin type III domain-containing protein; AltName: Full=Neuroglian-like protein; Flags: Precursor [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138056952

ATGTGGCGGATCACTCTAATCTTAGTTTCACTCTCCTACCTCTCCATATTGTGCAATGGTCAAGGACCAAAACCTGCCCCACCCCAGATTACTGAATTTTTACAAAACGACTTGGTAGCTCCAGATGAGGTGAAGTTTCGGGATAACGAAAACTGGCAGCTTATTCTCCCATGTCGTGCCACAGAATCAAACAAGTTGTCATGGGAATGGAGGCACAACGATAGCATAATTGATCCACGAAAATTTGAGTTTAATGCTAATTGGCAGCTTAGTAAAGATGGTACCTTGTCGGCCAAGGGCCTAAGCATATCGGACAGTGGAACCTACCAGTGTTTTGTCACAGATACTGTTACTGGTGTCAAGACATTTAGCCGGAAGCTAAGGGTTGCAGTAACTGCTGTTGGACAGTTCAATGATGAATTAGCCATTACCCGTCAAGTTCAGCTTGGTAGGCCGTTTGAGTTTGACTGTCCTCCTCATGGCCCCAGTTCTCTCGTTAGTTTCACTTGGACGTCTGCATCGAAAAAGGAATTAAACATCCAATTTTCGAGAAGCGAGAGAGTTGCAATTGATCCATCAAATGGTGCTTTGCACATCATATACGTTACGCCAGAAGATATTACACACATTAAGGATTCGGGAGGAATCCAGTGCACAATGTGGGGTGCAAACACCTTTTTCAGCTCTGGTGCCTTGACTTTAACAACACCACCAGGCGAACCAGATCCCGCCGAATTTAGCATTCCATCTTTTGTAACTTCTGCAACATCAAAATCTGTTGAAGTAGCTGTGGAGGGAAGAAGTAAGCTGTTGTATTGCCTAGCTACTGCAAGACCATTCCCAAGAATAACCTGGAAAAAAAATGGGAAGGAACTTCAAGATGGGGTAGATTCCTTTGAAATTCCAAGTCAATTGAAAGGACGGCTCCTGAAGATCACAAAGGTGGATGAGAATACGCACGAAGATAATTATACCTGCCAAGCCAGCAATAATCAAACCATAGGAACTGGTCCAAAAGAAGTTACTATAGACCTTCAGGTGGAAGTTGCTCCAAGGTGGAATGTTGAACCACCTGTAAGTCAAAAATTTCCCATATCATCAAATGCAAACTTGAGCTGTGACGTGTATGCAGAGCCTGAACCACAAATTAAATGGTTCAGAGATGGAGAAGAAATATTAGTGGCAAGCTCAAGGGTACAACAGGTGAATACTGACCTACTTTTCATTAATCTTACATTGGAAGAGGCCGGCATTTACCAATGTGTGGCTGAAAACAAACATGGCATGATAGTCTCGTCAACTTATGTTGAAGTGTTAGCCATTAAACCATCGTTTCAAAAGAATGGATTTGGTCCATTTTACCTGTTTCAAGAAAGTGAAGGACGATTGAAATGCGACCCCGAAGCTGCTCCGAGACCAACCATATTCAAGTGGTACAAGGACGATATCGAAATCACGCCTGGTGTGACATACCAGATCGAAAGCGACGGCACCTTGGTGATTAGCAACGTTCAACGTAGCCGAGATCAGGGCAAATACGCCTGCTATGCGGAGAATTTCCTGGGAGATGATGTGGCAGAAAGCAATGCGATTGTTTATGGTGCCCCATATCCACCATACAATCTAAAATTATCTTCCGACTGCAAAAACCGAAACACAACATTAACCTGGGTAACGGGCGAATCGAATAAAGCCCCGATTTCTCATTTTTTGGTCGAGCGAAAATCGGCCCACCCTGACGACGTCTGGGAAGTCATTGCAAAAGTTACCAAGCCTAACGCCACCTCATATGCGCTGGTGAAAATGGCCGGAGACGCCGTCCTGGCCTTCCGGGTTACAGCTGTCAATGGCTTCGGTCCAAGTCATCCGAGTAACGCTACGAGCTCGGTGTGCCGAACAGACGCTGCAGGTCAGCGGACAACGACGCCAATTCACCAGACAGCTTGGTTCATTGCATTGCTGGTTTTTATTGCTATACTGATTGTGGTTTTGCTTATCTTTGTGCTCTATGATCGTTATCAAGGCGCTAAATACCCAGTTGGTAAGCGTGAGACGAAGAGAGCAGCTCTTATGGATCGCGAACCTTGTGACGAAGAGGAAGGAGCTGTCACTAATAATGGCCGGACGGAAAACCCTCCACCGAAGTCCCCAGATTCTGAGCGGGACAGCTTGGATGACTACGGCGAAGGACCTCACTTCAACAAAGATGGCTCCTTCATAGAGGAATATGGCGACGAGAAAGACGCACCCCCAAAAAAGAGAAAGAGGCACCCCCAAAAGGATCCTTCGGCTCTGGGCACGTTTGTTTGA

Transcript

rna-XM_068902944.1

CAGCTTGGTCGGTCCTGACTTTTTCATTCCAGTCATTCTAATGCCTGGAATTGATTATTTATATAAGCGCAATTGAAATGTTTTATGCTGCGTCTACCCAGTGCACACCTTCACAAAAATCCTCCCACCAAGAAATTGACATCCCATAGATTAATGTTCCTCTCTGCCACCCCACCCCACGCcccaagaaaataaaaacttatGGACCAGAGCACCCCTCTAAAATCATTAACGAGTACAATCATGTGTCGTTAGACAGAGTTAAGTCTATGAGTATCACTCGTAGAAGCTGGGAAAGGGTTGAAAGTTTGAGCAAAACATTGTGGACATATCATATTTATTTTAAGCACTATAATTGTTctaaaaatgtgaaattttacaaaagatCTGTGGGCTCGTTATTGCTTACATTATTTATACACCTCTAGATAATTTCTCATTCTTTGATGGTCTTTGATGGCCAAATCTCACAGTGATCTGCTTTTTTGATTGAGAACAAAAGGCATAAAACATCGGGGTTAAATGAACAAGCTATAACTATTAAAGTCCTTTGACACCCAAAACGGctgaaccggccagacttactattttactctgtctaacaccagagtattttacttgtcaaaggAGAACCCCCGGGGATTGATGGGTTAATTACTGTTTGCAAATTTgtatgatgaaataaaatgtCAATGTTATGACTGTCATtgatactaaaacaaggaacaacCCAAAAGGAtctaaaatgagctacaacaGCAtttaaaatgacctaaaatgatctaaaaaaggcaaaatgatGGTAAATCATTTAGGTCGTTTTGGGTCATTTTAGACCCTGTTGTAcaggtcattttagatcattttaggtcattccttcTTTTAGTAACTATATGACTGTGTCAACAGAAACTTAACCTTAACTTCCTGTCTTtgattaaaattattgttaaaattaaaatatttaattgtcACCATTCCTTGCAGGCACgttctttttgttgttgaacaCAATGTGGCGGATCACTCTAATCTTAGTTTCACTCTCCTACCTCTCCATATTGTGCAATGgtcAAGGACCAAAACCTGCCCCACCCCAGATTACTGAATTTTTACAAAACGACTTGGTAGCTCCAGATGAGGTGAAGTTTCGGGATAACGAAAACTGGCAGCTTATTCTCCCATGTCGTGCCACAGAATCAAACAAGTTGTCATGGGAATGGAGGCACAACGATAGCATAATTGATCCACGAAAATTTGAGTTTAATGCTAATTGGCAGCTTAGTAAAGATGGTACCTTGTCGGCCAAGGGCCTAAGCATATCGGACAGTGGAACCTACCAGTGTTTTGTCACAGATACTGTTACTGGTGTCAAGACATTTAGCCGGAAGCTAAGGGTTGCAGTAACTGCTGTTGGACAGTTCAATGATGAATTAGCCATTACCCGTCAAGTTCAGCTTGGTAGGCCGTTTGAGTTTGACTGTCCTCCTCATGGCCCCAGTTCTCTCGTTAGTTTCACTTGGACGTCTGCATCGAAAAAGGAATTAAACATCCAATTTTCGAGAAGCGAGAGAGTTGCAATTGATCCATCAAATGGTGCTTTGCACATCATATACGTTACGCCAGAAGATATTACACACATTAAGGATTCGGGAGGAATCCAGTGCACAATGTGGGGTGCAAACACCTTTTTCAGCTCTGGTGCCTTGACTTTAACAACACCACcaggcgAACCAGATCCCGCCGAATTTAGCATTCCATCTTTTGTAACTTCTGCAACATCAAAATCTGTTGAAGTAGCTGTGGAGGGAAGAAGTAAGCTGTTGTATTGCCTAGCTACTGCAAGACCATTCCCAAGAataacctggaaaaaaaatgggaaGGAACTTCAAGATGGGGTAGATTCCTTTGAAATTCCAAGTCAATTGAAAGGACGGCTCCTGAAGATCACAAAGGTGGATGAGAATACGCACGAAGATAATTATACCTGCCAAGCCAGCAATAATCAAACCATAGGAACTGGTCCAAAAGAAGTTACTATAGACCTTCAGGTGGAAGTTGCTCCAAGGTGGAATGTTGAACCACCTGTAAGTCAAAAATTTCCCATATCATCAAATGCAAACTTGAGCTGTGACGTGTATGCAGAGCCTGAACCACAAATTAAATGGTTCAGAGATGGAGAAGAAATATTAGTGGCAAGCTCAAGGGTACAACAGGTGAATACTGACCTACTTTTCATTAATCTTACATTGGAAGAGGCCGGCATTTACCAATGTGTGgctgaaaacaaacatggcatgaTAGTCTCGTCAACTTATGTTGAAGTGTTAGCCATTAAACCATCGTTTCAAAAGAATGGATTTGGTCCATTTTACCTGTTTCAAGAAAGTGAAGGACGATTGAAATGCGACCCCGAAGCTGCTCCGAGACCAACCATATTCAAGTGGTACAAGGACGATATCGAAATCACGCCTGGTGTGACATACCAGATCGAAAGCGACGGCACCTTGGTGATTAGCAACGTTCAACGTAGCCGAGATCAGGGCAAATACGCCTGCTATGCGGAGAATTTCCTGGGAGATGATGTGGCAGAAAGCAATGCGATTGTTTATGGTGCCCCATATCCACCATACAATCTAAAATTATCTTCCGACTGCAAAAACCGAAACACAACATTAACCTGGGTAACGGGCGAATCGAATAAAGCCCCGATTTCTCATTTTTTGGTCGAGCGAAAATCGGCCCACCCTGACGACGTCTGGGAAGTCATTGCAAAAGTTACCAAGCCTAACGCCACCTCATATGCGCTGGTGAAAATGGCCGGAGACGCCGTCCTGGCCTTCCGGGTTACAGCTGTCAATGGCTTCGGTCCAAGTCATCCGAGTAACGCTACGAGCTCGGTGTGCCGAACAGACGCTgcagGTCAGCGGACAACGACGCCAATTCACCAGACAGCTTGGTTCATTGCATTGCTGGTTTTTATTGCTATACTGATTGTGGTTTTGCTTATCTTTGTGCTCTATGATCGTTATCAAGGCGCTAAATACCCAGttGGTAAGCGTGAGACGAAGAGAGCAGCTCTTATGGATCGCGAACCTTGTGACGAAGAGGAAGGAGCTGTCACTAATAATGGCCGGACGGAAAACCCTCCACCGAAGTCCCCAGATTCTGAGCGGGACAGCTTGGATGACTACGGCGAAGGACCTCACTTCAACAAAGATGGCTCCTTCATAGAGGAATATGGCGACGAGAAAGACGCACCcccaaaaaagagaaagaggcaCCCCCAAAAGGATCCTTCGGCTCTGGGCACGTTTGTTTGAGCCGTGTTTGGGTGGCTATAATTTTAGCGTTTTTCATTAACCCATGCGCTGGTTCTACCAAGGTTTTAAGTTGTTTGGAGCTAATTTGAAGGTTGAAATGTAATAATGCAGTCATTTCCTTGTAAAGCAATATGAGGTTGTGCATAAAAGCGATGGAAAATTTGAAGCGTAGTTAAACCACCAGCAGATGAAGGCGACGGTTTAGAAAGTTCGGATTTTATTAAATCATTCAAAGAACGCTCCATTTGCTTtgcaaaaaaagggaaaaacaagCCATGCCCTCCTCGCCATCTTGCTGTCTTGtatgtatttttctttaagAATCCCTgttacacatttttttttcgggtGGGGGAGGGTGGGAAAGGCTCTATCGAATGCTTTATACAGAGTAGTGTTCGTCTAAGTAGATTTGGTATTCGGTAGTCTAGCCACGAATTTCTTCCCAAGAATAGAGCTGGCAAAAACCAAGTTATTTGTTCACCGTACCTTTTTAAagtgttctaaaaataaattagaGCGAGGCTaacacggaaaataacaaaaggCGAGGTCTCGCAGACCATAAATGGCGTTGTCACGTCTTCTGCAGCAAAGCGTTTTGTGAATTGCATGACTCTTCTCAGTGTCACGAAATCTCGTTGACATCATATGAAAAACACACATTGCTGATGCAAGCAGGAGGAAGTAAAGAATTTTTGCAATTAGAAATACAAAAGCATCTAAATAATTGTTTGATTGTCTTTCTTTTTACGACAAAGCTGTGTTGCTTGCTGTTTGCACAAAGCTTAAAAACTTTCAAGTTGTTTCAAATCCCTTACACCATGAGAGGCAAAGCTTTTTTCAGTGTTAAGGTAAATAAACTGCCATATGTCAGTTTAAACTTACGTCGAGGACCGTTCCATCGTTTGATGTTTTAATGGCGTGTACAAAAAAAAGCTTCTCTGTTGACTTCTTCATTGTAAAAACTGTCTCTGAATTCTGAAGTCAAATGACGGGGCGTTAGTAATCTTGTCACCGCTTTTGCTTTTTTCCAGTGTTtaataaagagaataaaataCCTGTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8VIW9	Fibronectin type III domain-containing protein OS=Acropora millepora OX=45264 PE=1 SV=1
P22063	Contactin-2 OS=Rattus norvegicus OX=10116 GN=Cntn2 PE=1 SV=1
Q61330	Contactin-2 OS=Mus musculus OX=10090 GN=Cntn2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000412 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13882 all species →	Bravo_FIGEY	Bravo-like intracellular region	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR026966 all species →	Domain	Neurofascin/L1/NrCAM, C-terminal domain	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170 all species →	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068759045.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068759045.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

10.6Max TPM

2.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	2.77	10.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	10.65
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	5.48
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	5.06
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	5.03
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	4.94
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	4.85
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	4.40
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	4.38
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	4.25
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	4.03
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	3.96
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	3.52
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	3.29
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	3.08
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	3.05
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	2.98
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	2.97
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	2.81
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	2.72
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	2.58
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	2.46
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	2.38
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	2.35
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	2.24
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	2.10
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	2.10
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	2.10
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.