Genomic Location: chr8:6856357...6945027
NR annotation: XP_044184434.1, uncharacterized protein LOC114957638 isoform X1 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families
| CDS |
| LOC138059330 |
| Transcript |
| rna-XM_068904902.1 |
| Protein |
| XP_068761003.1 |
| UniProt accession | Description |
|---|---|
| Q9BYK8 | 3'-5' exoribonuclease HELZ2 OS=Homo sapiens OX=9606 GN=HELZ2 PE=1 SV=7 |
| E9QAM5 | 3'-5' exoribonuclease HELZ2 OS=Mus musculus OX=10090 GN=Helz2 PE=1 SV=1 |
| Q6DFV5 | Probable helicase with zinc finger domain OS=Mus musculus OX=10090 GN=Helz PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000671 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00773 all species → | RNB | RNB domain | Domain | Interproscan |
| PF13087 all species → | AAA_12 | AAA domain | Domain | Interproscan |
| PF13086 all species → | AAA_11 | AAA domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR047187 all species → | Domain | Upf1-like, C-terminal helicase domain | Interproscan |
| IPR011990 all species → | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR019734 all species → | Repeat | Tetratricopeptide repeat | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR022966 all species → | Conserved_site | Ribonuclease II/R, conserved site | Interproscan |
| IPR001900 all species → | Domain | Ribonuclease II/R | Interproscan |
| IPR050534 all species → | Family | Coronaviruses polyprotein 1ab | Interproscan |
| IPR041679 all species → | Domain | DNA2/NAM7 helicase-like, C-terminal | Interproscan |
| IPR041677 all species → | Domain | DNA2/NAM7 helicase, helicase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43788 all species → | DNA2/NAM7 HELICASE FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0004540 all species → | Molecular Function | RNA nuclease activity | Interproscan |
| GO:0043139 all species → | Molecular Function | 5'-3' DNA helicase activity | Interproscan |
| GO:0004386 all species → | Molecular Function | helicase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K25165 | HELZ2; 3'-5' exoribonuclease HELZ2 | EC:3.1.13.1 EC:5.6.2.6 | Messenger RNA biogenesis | ko03019 | deepkoala |
Transcript abundance of XP_068761003.1 across 36 RNA-seq samples of Montipora capricornis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Polyps | 36 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM,
StringTie quantification over 36 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.