Detailed information of XP_068761024.1 in Montipora capricornis

Genomic Location: chr8:7376056...7434837
NR annotation: XP_044184434.1, uncharacterized protein LOC114957638 isoform X1 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9BYK83'-5' exoribonuclease HELZ2 OS=Homo sapiens OX=9606 GN=HELZ2 PE=1 SV=7
E9QAM53'-5' exoribonuclease HELZ2 OS=Mus musculus OX=10090 GN=Helz2 PE=1 SV=1
Q6DFV5Probable helicase with zinc finger domain OS=Mus musculus OX=10090 GN=Helz PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000671 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00773
all species →
RNBRNB domainDomainInterproscan
PF13086
all species →
AAA_11AAA domainDomainInterproscan
PF13087
all species →
AAA_12AAA domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR022966
all species →
Conserved_siteRibonuclease II/R, conserved siteInterproscan
IPR011990
all species →
Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR012340
all species →
Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR001900
all species →
DomainRibonuclease II/RInterproscan
IPR050534
all species →
FamilyCoronaviruses polyprotein 1abInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR047187
all species →
DomainUpf1-like, C-terminal helicase domainInterproscan
IPR000571
all species →
DomainZinc finger, CCCH-typeInterproscan
IPR019734
all species →
RepeatTetratricopeptide repeatInterproscan
IPR041677
all species →
DomainDNA2/NAM7 helicase, helicase domainInterproscan
IPR041679
all species →
DomainDNA2/NAM7 helicase-like, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43788
all species →
DNA2/NAM7 HELICASE FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0003723
all species →
Molecular FunctionRNA bindingInterproscan
GO:0004540
all species →
Molecular FunctionRNA nuclease activityInterproscan
GO:0043139
all species →
Molecular Function5'-3' DNA helicase activityInterproscan
GO:0046872
all species →
Molecular Functionmetal ion bindingInterproscan
GO:0004386
all species →
Molecular Functionhelicase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K25165HELZ2; 3'-5' exoribonuclease HELZ2EC:3.1.13.1
EC:5.6.2.6
Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068761024.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples
30TPM > 0
1Conditions
30.4Max TPM
4.8Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Polyps 36 30 4.82 30.41

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP