Gene detail

Detailed information of XP_068761102.1 in Montipora capricornis

Genomic Location: chr8:41673298...41678913
NR annotation: XP_029191723.2, alkyldihydroxyacetonephosphate synthase, peroxisomal-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068905001.1

GTCACAAGCTATCACCAGATCAGTGAACGTGTGTACTGTTTAGGTTCTACACGGTAACATTTTTGCTACCTTTTGGCAAGAAATATCACTCAACCAAAGGAAGCTATCAATATGAGTGGTAGCAGACGACTGAAGGTCATAGCTGGCCACTTGTCACAGCCTAGTGAAATGGCTGCGTCTTCACAGAATTGTGGAGGGACCTCCAAAGAGACTGATAGCAAGAATCCAGGAAGACTAGATATCCTCAAATGGAATGGCTGGGGTTATAAAGATTCAAAGTTTGTGGTAAAACCGGATGGCCAAGTAGAATTTTCAGGGTCGCGCTACGCTATAGGGGGACACACTTTTCCAAAGTTGTTAGATTGGTTTGTCAAACAATGCCATGGCGACCTTAGCCTCAGTACGCCTGCCCAGCCCCTCCCTGATCCAAGTTCCCTACCAAGTGTGCAGGTAAATCAACCATTCTTGACTTGTGTCAAGGAGTCTGGCATTCAGCATACGTTGGACCCACATGAAAGACTCTTTCGTGGACATGGTCACACTTGTCAAGAAATATTTGAGCTGCGTCATGGAGCTTTTCAACGCATTCCTGACATAGTCATTTGGCCAAGTTGTCACAATGATGTGGAGAAAATAGTACGGCTTGCTGTAGAACACAATGTGTGCGTTATTCCCTTTGGAGGTGGAACCAATGTGACACATGCGCTGGAGTGTCCAAAGACTGAGAAAAGAATGATTGTCTCCTTGGACATGACAGAGATGAAGAAGATTCTTTGGATAGATGAAGAGAATTTAGTGGCTCATATCGAAGCAGGAATGATTGGCGAGGAGTTGGAGCGGCAGCTAAATGCGAAAGGTCTGTGTGTAGGACACGAGCCGGATTCTTTGGAATTTAGTTCTGTTGGAGGTTGGGTGGCTACTCGCTCGTCTGGGATGAAAAAGAATATCTACGGTAATATTGAAGATCTCTTAGTTCGTGTCAAACTGGTCACGCCACAGGGCACTCTGGAAAAAAGCTGTCAAGTTCCCCGAATGTCTACAGGCCCAGATATTCATGAAGTAATTCTAGGCTCTGAAGGGACGCTGGGAGTTGTCACAGAAGTGAGCTTGCGAATTCGTCCGCTTCCCGAATGCAAGGTATATGGTTCCGTCGTATTCCCATTTTTTGACACTGGGGTAGCGTGTCTCAGGGAGATCGCCAGGCAACGCATTGCTCCTGCATCCATTCGCTTGATGGACAATGAACAGTTTTTATTTGGACAAGCTCTGAAGCCAAAGGGTGGCTCTTACTTGAAAACATTCCTTGACGGACTGAAGGCGTTGTACCTGACGAAGTTTAAAGGCTTTGATCCTAATCAATTGTGTGCTGCTACTCTGTTATTTGAAGGTAACAAGTTAGAGGTAGCAAACCAACAAAGAAGAATCTACGAAATTGCCTCTCGTTTCGGCGGTATTCCGGGCGGTGAAGAAAACGGTCAGCGGGGGTACACATTGACTTTTGTGATCGCCTATCTCAGGGACTTGTCCTGTGAATTCGGTTACTTGTCAGAGTCGTTCGAAACTTCTGTACCCTGGGATCGAGTCACTGATTTGTGCCGCAACGTGAAGGaaacactgaaacgaaaatgCGCAGAGGTTGGAATTAAGCATCCTCCCCTGACCTTGTGTCGCGTGACCCAGACCTACGATGTTGGCGCATGCGTGTATTTTTACCTTGGATTCTGTTCTGATGGTCTCGCCAATCCAGGAGAAACATATGATGAAGTGGAGAGTGCCGCGCGCGATGAAGTGCTGGCTCATGGCGGCAGTTTATCTCACCATCACGGAGTTGGCAAAGTAAGGAAGAAATGGCTAGCGCAGACAGTGTCGGATGTTGGGATTGAAATGCTGCGAAGTATCAAGAAATCCATCGATCCCCAGAATATATTTGGAAATGGAAACTTACTGTAATGCTATGCTTCATGAAAAATCTCGCATCACATTTGAAATTAAGACTTTCTTGCGCTGTGTCATGATTAACGTCATGAATGCCAGGTCTGTTTTTCCAAACTAATCTTCCGTGAATTGAGCCCTATTTTCGGTGAAAATAATCTTCTTAGTTTCGATTGGGGAAACATGGCCTCTGATCACGTGACTGAAAAGCAACGATTGGCTGGAGAAATTGCGTTGTTTTGCAAATGAAGATAATTGCCTTTGTCGATGGTTGCCCCTctgtggttgttttttttttactcgaCCCATTGACAGTTTTCTATGATTGGTCAACACACCATACGCATTGCACGGATATCGGTAATTCGTAAAGAACTTTGATTGATCAGTGAGAAATTTGTTTCTGACCATATACGGTTACATTATATgtcataatgaaaaaaaaatacgaaagagagaagtgatccttgtacTTCTCAGGACAATTTCAAATATACTACGCCTTCTTGAaaggtttaacat

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EQR2	Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus norvegicus OX=10116 GN=Agps PE=1 SV=1
O00116	Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo sapiens OX=9606 GN=AGPS PE=1 SV=1
P97275	Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia porcellus OX=10141 GN=AGPS PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007340 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02913 all species →	FAD-oxidase_C	FAD linked oxidases, C-terminal domain	Domain	Interproscan
PF01565 all species →	FAD_binding_4	FAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004113 all species →	Domain	FAD-binding oxidoreductase/transferase, type 4, C-terminal	Interproscan
IPR006094 all species →	Domain	FAD linked oxidase, N-terminal	Interproscan
IPR016164 all species →	Homologous_superfamily	FAD-linked oxidase-like, C-terminal	Interproscan
IPR036318 all species →	Homologous_superfamily	FAD-binding, type PCMH-like superfamily	Interproscan
IPR016169 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 2	Interproscan
IPR016167 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 1	Interproscan
IPR016171 all species →	Homologous_superfamily	Vanillyl-alcohol oxidase, C-terminal subdomain 2	Interproscan
IPR025650 all species →	Family	Alkyldihydroxyacetonephosphate synthase	Interproscan
IPR016166 all species →	Domain	FAD-binding domain, PCMH-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46568 all species →	ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0008609 all species →	Molecular Function	alkylglycerone-phosphate synthase activity	Interproscan
GO:0008610 all species →	Biological Process	lipid biosynthetic process	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00803	AGPS, agpS; alkyldihydroxyacetonephosphate synthase	EC:2.5.1.26	Peroxisome	ko04146	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068761102.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

39.7Max TPM

8.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	8.60	39.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	39.75
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	26.21
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	26.16
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	16.43
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	14.39
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	14.13
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	13.25
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	13.16
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	13.12
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	12.66
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	12.56
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	9.33
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	8.64
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	7.58
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	7.57
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	7.47
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	7.23
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	6.34
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	6.22
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	5.49
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	5.27
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	5.18
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	5.15
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	4.91
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	4.83
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	4.21
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	4.15
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	4.13
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	4.03
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.