Detailed information of XP_068761490.1 in Montipora capricornis

Genomic Location: chr8:25097597...25175424
NR annotation: XP_020605039.1, uncharacterized protein LOC110043879 isoform X2 [Orbicella faveolata]
Species Montipora capricornis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q15047Histone-lysine N-methyltransferase SETDB1 OS=Homo sapiens OX=9606 GN=SETDB1 PE=1 SV=1
O88974Histone-lysine N-methyltransferase SETDB1 OS=Mus musculus OX=10090 GN=Setdb1 PE=1 SV=1
Q6INA9Histone-lysine N-methyltransferase SETDB1 OS=Xenopus laevis OX=8355 GN=setdb1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002134 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01429
all species →
MBDMethyl-CpG binding domainDomainInterproscan
PF05033
all species →
Pre-SETPre-SET motifFamilyInterproscan
PF18358
all species →
Tudor_4Histone methyltransferase Tudor domainDomainInterproscan
PF18359
all species →
Tudor_5Histone methyltransferase Tudor domain 1DomainInterproscan
PF00856
all species →
SETSET domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR046341
all species →
Homologous_superfamilySET domain superfamilyInterproscan
IPR001214
all species →
DomainSET domainInterproscan
IPR001739
all species →
DomainMethyl-CpG DNA bindingInterproscan
IPR002999
all species →
DomainTudor domainInterproscan
IPR007728
all species →
DomainPre-SET domainInterproscan
IPR041292
all species →
DomainHistone methyltransferase, Tudor domain 2Interproscan
IPR016177
all species →
Homologous_superfamilyDNA-binding domain superfamilyInterproscan
IPR051516
all species →
FamilyHistone-lysine N-methyltransferase SETDBInterproscan
IPR041291
all species →
DomainHistone methyltransferase, Tudor domain 1Interproscan
IPR003616
all species →
DomainPost-SET domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46024
all species →
HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESSInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0003677
all species →
Molecular FunctionDNA bindingInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan
GO:0042054
all species →
Molecular Functionhistone methyltransferase activityInterproscan
GO:0010629
all species →
Biological Processnegative regulation of gene expressionInterproscan
GO:0046974
all species →
Molecular Functionhistone H3K9 methyltransferase activityInterproscan
GO:0051567
all species →
Biological Processobsolete histone H3-K9 methylationInterproscan
GO:0070828
all species →
Biological Processheterochromatin organizationInterproscan
GO:0090309
all species →
Biological Processobsolete positive regulation of DNA methylation-dependent heterochromatin formationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11421SETDB1; [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferaseEC:2.1.1.366
Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068761490.1 across 36 RNA-seq samples of Montipora capricornis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples
0TPM > 0
1Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Polyps 36 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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