Detailed information of XP_068761633.1 in Montipora capricornis

Genomic Location: chr8:19948040...19960964
NR annotation: XP_015757027.1, PREDICTED: uncharacterized protein LOC107336460 [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q54HH8Small nuclear ribonucleoprotein Sm D-like protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0289453 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007761 (this species only)

 Pfam domain
No Pfam domain signature was detected for XP_068761633.1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR010920
all species →
Homologous_superfamilyLSM domain superfamilyInterproscan
IPR039267
all species →
FamilyU7 snRNA-associated Sm-like protein Lsm11Interproscan
IPR034109
all species →
DomainSm-like protein Lsm11, middle domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21415
all species →
U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM11Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005683
all species →
Cellular ComponentU7 snRNPInterproscan
GO:0006398
all species →
Biological ProcessmRNA 3'-end processing by stem-loop binding and cleavageInterproscan
GO:0071209
all species →
Molecular FunctionU7 snRNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for XP_068761633.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068761633.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples
29TPM > 0
1Conditions
18.8Max TPM
4.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
Polyps 36 29 4.08 18.79

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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