Genomic Location: chr8:19948040...19960964
NR annotation: XP_015757027.1, PREDICTED: uncharacterized protein LOC107336460 [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families
| CDS |
| LOC138059880 |
| Transcript |
| rna-XM_068905532.1 |
| Protein |
| XP_068761633.1 |
| UniProt accession | Description |
|---|---|
| Q54HH8 | Small nuclear ribonucleoprotein Sm D-like protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0289453 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007761 (this species only) |
XP_068761633.1. This gene does have a gene model — the search simply returned no hit.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR010920 all species → | Homologous_superfamily | LSM domain superfamily | Interproscan |
| IPR039267 all species → | Family | U7 snRNA-associated Sm-like protein Lsm11 | Interproscan |
| IPR034109 all species → | Domain | Sm-like protein Lsm11, middle domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21415 all species → | U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM11 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005683 all species → | Cellular Component | U7 snRNP | Interproscan |
| GO:0006398 all species → | Biological Process | mRNA 3'-end processing by stem-loop binding and cleavage | Interproscan |
| GO:0071209 all species → | Molecular Function | U7 snRNA binding | Interproscan |
XP_068761633.1.Transcript abundance of XP_068761633.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| Polyps | 36 | 29 | 4.08 | 18.79 |
Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM,
StringTie quantification over 36 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.