Gene detail

Detailed information of XP_068761650.1 in Montipora capricornis

Genomic Location: chr8:45041534...45048671
NR annotation: XP_029193361.1, N-alpha-acetyltransferase 60-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068905549.1

CTTACCTAAAACCCATTtttctggagaaaaaaaaattgaatgacAATCAATCTGGGTTTGCTAAACGATGTTCAGGTGCGGTTCTTATGCCCAACCGATTTGGAGGAGGTCAAGCGGTTGTGTCGCGAATGGTTTCCGATCGAATACCCCGATATTTGGTATGACGAGATAACATCAAGCTCTCGCTTCTTTTCCCTGGCAGCTACATTaaacaagaatattattggtctTCTTGTGGCAGAAGTCAAGACGAAGTCTCTTTGTAATAAAGAGGATGGTGGCATTCTTTCCTTCGCATTTGGTGACGACACCACGGTGGCATACATTTTGAGCATTGGTGTTGTTAAAGAGTACAGGAGACATGGTATAGGGTCTCTGCTTTTGGATAGTTTACTGTGCCACCTGACGACACCTGAGAGACAAAACTGTAAAGCTGTGTATCTTCATGTTTTAACTACAAACTTGGCTGCAATGCAGTTTTATGAAAAGAGACATTTCACCCAGTTCCGCTACCTTCCGCTGTATTATGCCATCAATGGCACACACAGAGATGGCTTCTCGTATGTGCTGTATATCAATGGAGGGGAGCCACCTTGGACACTTGCTGATGCCTTGAGGTTTATTGGAAGCAAACTGTCCCAAGTCCAGCCTTGCAAGTTTCCACTGTATCTGATGAGTTGCTGTTATCATTGGCTTTTGTGGGTCACTCCTATCCAGGCCATTAGAGACTCTTGTGTTCGAACTCTTTGATTATGGATTTTATAAATCCCTCTTTGATGCAGCAAATGTTAAATTGAGATTGAGAAAATTATTGTTTGTATCATAAGGTGACCTGTGGTGGTTCATCATTTCAGCTAAagatttgttttataacatttaAGGAAAATTGGCTCCTAAGGTTTTTCCATCTTAACATACACTTTCGCTGCTAATCGGTATGAAAAGTAAACTGACATTCATGACTTTGAATTCTCTTTCTCGCATTTTCCAAGACTCTGCATCTGCTGAATTTAGTCTGCTCCCTGTTCATTGTTTACCCTTTGTATACCAAGTAATGTGAAATAGGCTGGGAAATAGGCAATCCCAAGAGCTTCAAGCAAGTCTTGCCTGCATGGCACTTCAGGGCCCAGGCACTGGTAGATGATGTTGAtcatcatcaaaatttaaaGAATGGTCTTTGTTTTATAGTAATGTTGATGCACAGAACTGCATCAGAATTTTCAGGATTATAACAAGTTATGGGAAAACTGTTTTTCTGTTGGTTGCCACCCTCGTAAAATgttaatgaatttcaaacaaGAAACATGCATGCAAGCTCAATCCTTATGCAAACTTTTAGGAAAACTGTAGTAACGGGATCGCCGATGCATTGGTTTGTGATGAGAGAAAAGTTGAGTTTGTTGCACAATATTATCATGCACATTCAGACTCTCATGTTTGTCTGCAAAGGTACTTTTTGGGAGagattatcatgatttgcttatAATTATTCACAAGAAAGATGACTGCTTAAAATTTGTgcataaaatatatttttaaaatatttgtcaaacGAGCTTTGGAAATTGAAGAGGGCTTTAagatgtttatttattttaaaaattgcaTAGGGTTTGCATTTTTCCTTCAACATtccttgaaatattttattgcaGTGATGATTTTTGGACTCTGCCCTCTGTTTTCATGATTTCTTTTCTGTGTCACAATGTCTTGACCACAAACCTTTAATTTCCTTAAACCAGGATTGTTTTTAAGAAATCCAGTTTGTCATCCCtaaaagaatattattttataacaTCTTGTTTTTACATTCATCCTTTACCTTTGCCTGTAAAAGTAAATGTACTTTTTGTAAGTTTCTCAGTACActgaaaaaaattttgttaCTGTTTTGTAAAGTATcagtaattattaattattttgtagaTTCCTTGAGTTTCCAAGTCCCGCACTGTTTTGTGCATGTATTTTCATTTATCACCCATGAGAGTCCCTGAAGAATAGGTAATAAACATTAAACATGCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A3KPA3	N-alpha-acetyltransferase 60 OS=Danio rerio OX=7955 GN=naa60 PE=2 SV=1
Q17QK9	N-alpha-acetyltransferase 60 OS=Bos taurus OX=9913 GN=NAA60 PE=2 SV=1
Q9DBU2	N-alpha-acetyltransferase 60 OS=Mus musculus OX=10090 GN=Naa60 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006887 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00583 all species →	Acetyltransf_1	Acetyltransferase (GNAT) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR045141 all species →	Family	N-alpha-acetyltransferase 60-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14744 all species →	N-ALPHA-ACETYLTRANSFERASE 60	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0004596 all species →	Molecular Function	peptide alpha-N-acetyltransferase activity	Interproscan
GO:0017196 all species →	Biological Process	N-terminal peptidyl-methionine acetylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21121	NAA60; N-alpha-acetyltransferase 60	EC:2.3.1.259	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068761650.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

157.0Max TPM

35.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	35.68	157.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	157.02
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	71.89
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	49.69
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	48.92
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	48.05
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	47.23
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	46.23
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	44.90
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	44.01
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	43.67
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	42.86
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	41.64
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	41.33
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	40.22
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	39.39
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	38.95
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	37.91
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	37.54
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	37.52
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	36.82
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	36.80
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	34.40
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	33.97
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	33.59
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	33.12
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	32.83
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	29.44
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	27.87
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	26.81
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.