Gene detail

Detailed information of XP_068761696.1 in Montipora capricornis

Genomic Location: chr8:33278317...33291249
NR annotation: XP_015752265.1, PREDICTED: alpha-protein kinase 1-like isoform X2 [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138059938

ATGGAAATGTTTCACACCTCACTTAAACCTTTGTTATTTCACGACAATAGCAAGCCCAATGAAGTTTGTGACTTTGAGTTATCTGTTCCTGTGGAATCCTTAATAGACCATTTGAAGGGTGACAAACCTCCTCCAGTCCTTATTCATGGTGAACCTGGATGTGGACGGACAACACTTCTTCTTGGAATCTGTGATACACTACTTGAAAGAAATTGGCTCAAAAAGTCTGAAATACTGGGTATGAGAGTAAGGCATGGATGCACTATGCTGTCTTTGTGGAGTTTTTTGAGTGAAATTGCGAAGGACAAGCTGGACAAAGACATACTTTCATTGCTACTGCAGCCAAGTGCCAAATTGAACAAGAAGCAGGAGGTGGCGCAGGAGTTAATTGCATCTAATTTCAAGCTCATCTGTGTTGATGATGCATTTGCAGATGGTGGGAGAGTGTGGTCACACCTTTCGCAATTGTTTTCTAACTTAAATGCTTGTGTAATTGCAGCCTGTTCTCAAAGTGAAGCTGCTCTTCTGCAGGCCACAATGACAGAACAAAATTTAATTCCTGTTTCTGTGAAATTGAAGGGAATTCATAAAGAGCCATTCAAGAAATTGCTCCTGCAACAACTTCCCAACAACTTTACATTACACGAACTGTTTGATATTTATTCTGTATTCAATGGTAACCCAACATCACTAAAGCTTTTTTTAGGTGCAGTTAATGAGTTAAAGCTTTCACAGCAAAGTGTCAATTGCAGTTTTCTAGCGAGCTCTACACACTCTGAAGAACTTCCAGTTGCTGAGCACACTGTTCTTCATGTGCTTCAGTTTGTGTTTCAACTTCTGACACCTGATGAAAAAAATGTCTTTTATCAACTTTGCTTGCTACGAGAACCTCTTCCCCTTGTTACTGTTCCACAAGAGATTGAAAAGCTTGCAAGACTTGGCTTGGTTGAAAAAGAAGTCATCAGTGAAGACAAGGAAATTAATAGTGTTCTGTACACCGTGTCAGTACCTTCTTGTTTTTGCCTTAGTTCATGGCAATTTAGTTGCATAGCTGAAAAAAATGGTCCCAGTAAACCTGACCTGATTCAAGAATGTTTCAGTGTCTTTGATTTGTGGTTTTGTCTTCTTTCTGAAAAACTTTTTCAGCTCATCAGTGATGCTCAAGGAAATGCCTGGCCATTTGTGCCTGAAAAGTGGCAGTACATTTCAAATGTTGGAGAGGAAGAGAGGTATAATATAAAGGAGCTAATTACTGCAAAGAATTCAGTTGTACCATACATGAGTGAACAAGATATCCTGGAGGAGTGCTTGTATCAAGCAGCTGTGGAAAAAAAATATGGTACAATGGCAGCACTGGTGTTTGTGATGGACAGGTTCAGTTATTGGCAAGGAAGTTCCCACACAACTCTGCAGCTTGTTGATTTCTTGAAAACAAACAGCCCCACCACTCCTATTGCTCCTCAGTTACTTATACGAAAAGCCAGGGTCATGAAAAATGCTGGTGATCTGCATGGTGCAGAGAAAGCTCTTGACGAACTCCTTATCAAGAAGAGCAAAGTGGGTGAATGGATTTATAAATATGAGCATGACCATCAGCTGGTCAGTGCAGTTTGTATTCAGATTAAAGGCGATATTCAATACAACCTTGGACAGTGGGTACAGGGAGCAAAGCTCTTACTTGAATCTCTGATTTTATTCAGCACTCTTCCCATTCCGGATACAAAGGGCATTGCCTCAAGCCTTGCTATTTTAGCCAATTGTCTTGAACCAATGAGTATGCAAGAATATGTCCCTTTAGCTCAGTCATATGGCCTTATGGGATCCCATCCACTATTGCAAGCTTACTACTGCTCATATGAGGCTTCCATGAGATCGCAGTACACTCCACTGTTTTATGCAAGACACAAGTGTCGTGCTGCTGAATTTATGTTGTGTTACTCACAACTCATTCCTGATGAAATTCAAAGGATAGAGCATTTAAAGATTGCAGCTGAAGATTTCAAGGACAGCATTCAAGCTCACAAAGAAGTCAACTCCCTCACCAGCCGTGAAGAGTTTTATGTCTTTGTTTGTGCAGTATATAAACTGGGCATCACTTATCAGGCGAGAGCAACACAAGACAGCATTCAACAAGCACATTGCATTGATGAAATGTCAAGGCTATTGTATGAGCATTACTGCTCATTTACTGGAACGATTCTCTTAGACAAGGAGATCACTGATTTGATCACTTACTGTCTCAGTTATTTGCAACTGAATCAGTTCTGTGGTGATGAGCTTCCTAACACAAAATCGCTGGTACAGAAATTTGAGCATATAGGCAAAACTGGTGTTACGGGGGAAGAGGATATCAAGAAACCACAATCCTTATTGCTGGAGAGCTCAGACCCCCTGGAGGTTCATATAAGTGAAGAATTCGTTTTTGCTGACAATGAAGCAGTTTTGAAAGTGCGCCTTGCTGGGCACACAGTATCAGACAAGTTAAAGGATACATGGGAACAGAAGACAGACAGTCATGATATTACATCTGTAGTGCTTGATATCATTCTTATGCGCTCAGACAAGAGTTCAAGCAACGTTAGTGCATTGACTGTTGATCGGAACTGTGACACCAAGAACAGCAAATCAGCGGTTGTTATTGATACTGTTGATCGCAGCATTGTGACTCAGTGTTTGGAGCAGGAGACTGTGTCTTTTCCTAGTAAACGATTCCTGGTACCTGAAACTGCAACAATTCAAAGTCAATTCCAAGGGCTGACTTTGAATTCAAGTCCACGAAGAGTGCAAGGTGCAATTGTTTGGAGATATGACTCTTCATGTAACATATGGAGGGGCGAGAAAACTCTTGCTTATGTTGGAAATTTATTGGAGTTAGCAAAGGACAAAGAGGGAGCTCAAAGGAATGCTTTTATGGTTGAGTTTATTAATCAAGAGGATCCATTTGCGAAGTATGTGGCAAAGTGCTACAAAAAAGCAAAGGATGTCCAGCAGTATCAACAAGATGTCATTTGTCAGATGACGGCCCGTTACTATGCAACACTGTTTAACCGACAGCTGAATAAAGCAGATCTTACCGTGGGCCACATAGAGTTTCTTCCTGTTCTCTTACTCCAGCTGGTAAATCCCAATGGTTCTTTGAGCGGTGTCTACAATGTGGAACGCTACATGGCTGGAGAGTTTATTAAACTCACCAACAACTTTCAGTTTGCCATAGATCGAGGCGTAGTGTCTGACCTTGTACTAGCATTCAGTCATTTCACCTATCAAGCGTCTAATGGGCAGCTGATTATCGTTGATATACAAGGCTGGACACCTGCTTCAAACGAGATTGGTTGTACGTTCCTCACCGACCCTCAGATACATTCCGTGGTGTACAATTGA

Transcript

rna-XM_068905595.1

CCGAGTTTAACACAGGTACATCTCGGAGATCTCGGAAGGATTTCAGGACACTACAGATCGCTTCCCCTCGGGgtGTTTAACAGTTACTAAAAATATGGAAATGTTTCACACCTCACTTAAACCTTTGTTATTTCACGACAATAGCAAGCCCAATGAAGTTTGTGACTTTGAGTTATCTGTTCCTGTGGAATCCTTAATAGACCATTTGAAGGGTGACAAACCTCCTCCAGTCCTTATTCATGGTGAACCTGGATGTGGACGGACAACACTTCTTCTTGGAATCTGTGATACACTACTTGAAAGAAATTGGCTCAAAAAGTCTGAAATACTGGGTATGAGAGTAAGGCATGGATGCACTATGCTGTCTTTGTGGAGTTTTTTGAGTGAAATTGCGAAGGACAAGCTGGACAAAGACATACTTTCATTGCTACTGCAGCCAAGTGCCAAATTGAACAAGAAGCAGGAGGTGGCGCAGGAGTTAATTGCATCTAATTTCAAGCTCATCTGTGTTGATGATGCATTTGCAGATGGTGGGAGAGTGTGGTCACACCTTTCGCAATTGTTTTCTAACTTAAATGCTTGTGTAATTGCAGCCTGTTCTCAAAGTGAAGCTGCTCTTCTGCAGGCCACAATGAcagaacaaaatttaattcCTGTTTCTGTGAAATTGAAGGGAATTCATAAAGAGCCATTCAAGAAATTGCTCCTGCAACAACTTCCCAACAACTTTACATTACACGAACTGTTTGATATTTATTCTGTATTCAATGGTAACCCAACATCActaaagctttttttaggtGCAGTTAATGAGTTAAAGCTTTCACAGCAAAGTGTCAATTGCAGTTTTCTAGCGAGCTCTACACACTCTGAAGAACTTCCAGTTGCTGAGCACACTGTTCTTCATGTGCTTCAGTTTGTGTTTCAACTTCTGACACctgatgaaaaaaatgtcttttatCAACTTTGCTTGCTACGAGAACCTCTTCCCCTTGTTACTGTTCCACAAGAGATTGAAAAGCTTGCAAGACTTGGCTTGGTTGAAAAAGAAGTCATCAGTGAAGACAAGGAAATTAATAGTGTTCTGTACACCGTGTCAGTACCTTCTTGTTTTTGCCTTAGTTCATGGCAATTTAGTTGCATAGCTGAAAAAAATGGTCCCAGTAAACCTGACCTGATTCAAGAATGTTTCAGTGTCTTTGATTTGTGGTTTTGTCTTCTTTCTGAAAAACTTTTTCAGCTCATCAGTGATGCTCAAGGAAATGCCTGGCCATTTGTGCCTGAAAAGTGGCAGTACATTTCAAATGTTGGAGAGGAAGAGAGGTATAATATAAAGGAGCTAATTACTGCAAAGAATTCAGTTGTACCATACATGAGTGAACAAGATATCCTGGAGGAGTGCTTGTATCAAGCAGCTGTGGAAAAAAAATATGGTACAATGGCAGCACTGGTGTTTGTGATGGACAGGTTCAGTTATTGGCAAGGAAGTTCCCACACAACTCTGCAGCTTGttgatttcttgaaaacaaacagCCCCACCACTCCTATTGCTCCTCAGTTACTTATACGAAAAGCCAGGGTCATGAAAAATGCTGGTGATCTGCATGGTGCAGAGAAAGCTCTTGACGAACTCCTTATCAAGAAGAGCAAAGTGGGTGAATGGATTTATAAATATGAGCATGACCATCAGCTGGTCAGTGCAGTTTGTATTCAGATTAAAGGCGATATTCAATACAACCTTGGACAGTGGGTACAGGGAGCAAAGCTCTTACTTGAATCTCTGATTTTATTCAGCACTCTTCCCATTCCGGATACAAAGGGCATTGCCTCAAGCCTTGCTATTTTAGCCAATTGTCTTGAACCAATGAGTATGCAAGAATATGTCCCTTTAGCTCAGTCATATGGCCTTATGGGATCCCATCCACTATTGCAAGCTTACTACTGCTCATATGAGGCTTCCATGAGATCGCAGTACACTCCACTGTTTTATGCAAGACACAAGTGTCGTGCTGCTGAATTTATGTTGTGTTACTCACAACTCATTCCTGATGAAATTCAAAGGATAGAGCATTTAAAGATTGCAGCTGAAGATTTCAAGGACAGCATTCAAGCTCACAAAGAAGTCAACTCCCTCACCAGCCGTGAAGAGTTTTATGTCTTTGTTTGTGCAGTATATAAACTGGGCATCACTTATCAGGCGAGAGCAACACAAGACAGCATTCAACAAGCACATTGCATTGATGAAATGTCAAGGCTATTGTATGAGCATTACTGCTCATTTACTGGAACGATTCTCTTAGACAAGGAGATCACTGATTTGATCACTTACTGTCTCAGTTATTTGCAACTGAATCAGTTCTGTGGTGATGAGCTTCCTAACACAAAATCGCTGGTACAGAAATTTGAGCATATAGGCAAAACTGGTGTTACGGGGGAAGAGGATATCAAGAAACCACAATCCTTATTGCTGGAGAGCTCAGACCCCCTGGAGGTTCATATAAGTGAAGAATTCGTTTTTGCTGACAATGAAGCAGTTTTGAAAGTGCGCCTTGCTGGGCACACAGTATCAGACAAGTTAAAGGATACATGGGAACAGAAGACAGACAGTCATGATATTACATCTGTAGTGCTTGATATCATTCTTATGCGCTCAGACAAGAGTTCAAGCAACGTTAGTGCATTGACTGTTGATCGGAACTGTGACACCAAGAACAGCAAATCAGCGGTTGTTATTGATACTGTTGATCGCAGCATTGTGACTCAGTGTTTGGAGCAGGAGACTGTGTCTTTTCCTAGTAAACGATTCCTGGTACCTGAAACTGCAACAATTCAAAGTCAATTCCAAGGGCTGACTTTGAATTCAAGTCCACGAAGAGTGCAAGGTGCAATTGTTTGGAGATATGACTCTTCATGTAACATATGGAGGGGCGAGAAAACTCTTGCTTATGTTGGAAATTTATTGGAGTTAGCAAAGGACAAAGAGGGAGCTCAAAGGAATGCTTTTATGGTTGAGTTTATTAATCAAGAGGATCCATTTGCGAAGTATGTGGCAAAGTGCTACAAAAAAGCAAAGGATGTCCAGCAGTATCAACAAGATGTCATTTGTCAGATGACGGCCCGTTACTATGCAACACTGTTTAACCGACAGCTGAATAAAGCAGATCTTACCGTGGGCCACATAGAGTTTCTTCCTGTTCTCTTACTCCAGCTGGTAAATCCCAATGGTTCTTTGAGCGGTGTCTACAATGTGGAACGCTACATGGCTGGAGAGTTTATTAAACTCACCAACAACTTTCAGTTTGCCATAGATCGAGGCGTAGTGTCTGACCTTGTACTAGCATTCAGTCATTTCACCTATCAAGCGTCTAATGGGCAGCTGATTATCGTTGATATACAAGGCTGGACACCTGCTTCAAACGAGATTGGTTGTACGTTCCTCACCGACCCTCAGATACATTCCGTGGTGTACAATTGATTTGGAACGGGCAATTTAAGCCAGAAAGGAATAGACAGCTTTTGGAAAAAGAAGCATCACCAGTGAAACGATCGTTGTAAACTAATGAAGCTTTTCAGACCAGATGCCCACAAATGACAATGAAAGTTAGATTTTTGCATGGGCAAGGAGTTGTTGTATGACGCCTCATAATTCTCAGTTTTGGATAGTGAGCAATTTTATGGACTGGGTTTTAACGTCACTTAGTGTGTTACTTTAGCAGTTTTATGataaatcaacaaattaactcGATTGTGATTGGAGAATGCGGGCAGTACAAATTTCTCTCAACTTACTTCTATATAGAGTCCCTATCAAGTTGCCATGACAACTACGCAAGTTTGATAAAGCGCTCAAGAAAATCTTAAACAAAACATAATGAATGATAGTGTACAAGACTACTCAAACTTGGATGAAACGTTTCAATAGCTAAATGAAAATTGTCTATCATATTTtggtaaaatccaactagtgttctgattggttgagctactagtaggctatttgttatagcccactagtagcgaaaagcgccggctttgaaagccaaaacaacaattaaagtctagctttaactagcgaaagatgttttgtctcgatatttttttgaccaactagttggattttactaaataattattcctctcgccctcatggcctctgagtcaatagcccattcggccttcggcctcatgggctattgactcagagcccattcgggctcgaggaataattgttaaatacacaaaaacaacaGCACGATCTTCTCGTGATGTTCTCATTGATCTCGAATGGGACTCGCGTAAAGCCCAATTTTGATAACTCAAAATGGGAAATGTACTCTAGATGTAGCAATACCCTGCACATACCTTGAAGGTAGTATCGAGGCTTTTCTGGCGTTCTGTCCATGCTCCTAACGTCAAGGAACATCTTTAGAGTTCACGTTACCGTTTATTAAACCAGTTGATATCCAGTTTACTTCCCACCCATGGGCCAATACAGTTGCTTTGGTCCCTTATTTTATCTCCTTAAGACACTACtagtttattttaactgattcCTGGGTTTATTTGAGATCGGATCCTTTGGTTGATTTCTTTGTTACCGTCAGTAGAAAACAATCTAACGCAAATAGCAATAaccaataat

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96QP1	Alpha-protein kinase 1 OS=Homo sapiens OX=9606 GN=ALPK1 PE=1 SV=3
Q9CXB8	Alpha-protein kinase 1 OS=Mus musculus OX=10090 GN=Alpk1 PE=2 SV=2
Q54DK4	Alpha-protein kinase 1 OS=Dictyostelium discoideum OX=44689 GN=ak1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003041 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02816 all species →	Alpha_kinase	Alpha-kinase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004166 all species →	Domain	Alpha-type protein kinase, alpha-kinase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR043529 all species →	Family	Alpha-protein kinase 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46747 all species →	ALPHA-PROTEIN KINASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0002753 all species →	Biological Process	cytoplasmic pattern recognition receptor signaling pathway	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0045087 all species →	Biological Process	innate immune response	Interproscan
GO:0048029 all species →	Molecular Function	monosaccharide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068761696.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068761696.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

12.9Max TPM

4.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	3.98	12.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	12.94
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	12.84
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	12.49
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	10.70
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	10.26
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	10.10
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	9.19
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	9.05
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	8.84
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	4.73
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	4.38
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	4.21
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	4.19
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	3.97
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	3.52
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	2.78
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	2.36
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	2.28
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	2.22
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	1.89
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.81
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.80
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.45
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.44
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	1.37
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.26
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	1.15
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.