Gene detail

Detailed information of XP_068761748.1 in Montipora capricornis

Genomic Location: chr8:45465204...45471247
NR annotation: XP_029193339.1, forkhead box protein J1-B-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1R8Z9	Forkhead box protein J1-B OS=Danio rerio OX=7955 GN=foxj1b PE=2 SV=1
Q66IG8	Forkhead box protein J1.2 OS=Xenopus tropicalis OX=8364 GN=foxj1.2 PE=2 SV=1
Q32NH9	Forkhead box protein J1.2 OS=Xenopus laevis OX=8355 GN=foxj1.2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007999 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00250 all species →	Forkhead	Forkhead domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001766 all species →	Domain	Fork head domain	Interproscan
IPR030456 all species →	Conserved_site	Fork head domain conserved site 2	Interproscan
IPR047512 all species →	Domain	Forkhead box protein J1, forkhead domain	Interproscan
IPR047513 all species →	Family	Forkhead box protein J1	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR018122 all species →	Conserved_site	Fork head domain conserved site1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46805 all species →	FORKHEAD BOX PROTEIN J1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09402	FOXJ1; forkhead box protein J1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068761748.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

35.9Max TPM

5.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	5.81	35.90

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	35.90
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	9.95
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	8.83
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	8.71
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	8.70
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	8.57
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	8.44
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	8.42
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	8.41
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	8.40
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	8.31
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	8.13
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	7.64
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	7.46
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	7.19
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	7.00
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	6.14
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	5.89
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	5.66
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	5.27
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	5.23
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	5.01
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	4.64
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	4.33
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	2.96
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	2.82
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.22
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.