Gene detail

Detailed information of XP_068761946.1 in Montipora capricornis

Genomic Location: chr8:33303477...33307020
NR annotation: XP_029209791.2, synaptogyrin-2-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43761	Synaptogyrin-3 OS=Homo sapiens OX=9606 GN=SYNGR3 PE=1 SV=2
Q8R191	Synaptogyrin-3 OS=Mus musculus OX=10090 GN=Syngr3 PE=1 SV=1
A2VE58	Synaptogyrin-3 OS=Bos taurus OX=9913 GN=SYNGR3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005345 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01284 all species →	MARVEL	Membrane-associating domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008253 all species →	Domain	Marvel domain	Interproscan
IPR016579 all species →	Family	Synaptogyrin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10838 all species →	SYNAPTOGYRIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030672 all species →	Cellular Component	synaptic vesicle membrane	Interproscan
GO:0031594 all species →	Cellular Component	neuromuscular junction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21956	DRAM2; DNA damage-regulated autophagy modulator protein 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068761946.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

134.3Max TPM

64.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	64.92	134.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	134.26
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	101.75
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	93.38
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	87.82
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	87.45
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	85.55
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	85.36
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	85.12
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	84.56
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	83.89
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	83.33
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	82.01
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	81.75
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	80.91
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	80.68
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	78.52
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	78.06
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	77.72
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	72.64
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	68.25
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	64.94
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	64.80
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	64.69
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	63.82
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	62.93
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	62.04
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	61.92
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	60.80
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	60.37
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	57.79
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.