Gene detail

Detailed information of XP_068762282.1 in Montipora capricornis

Genomic Location: chr8:20212945...20235188
NR annotation: XP_029179378.2, WW domain-binding protein 2-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R478	WW domain-binding protein 2 OS=Rattus norvegicus OX=10116 GN=Wbp2 PE=1 SV=1
P97765	WW domain-binding protein 2 OS=Mus musculus OX=10090 GN=Wbp2 PE=1 SV=1
Q969T9	WW domain-binding protein 2 OS=Homo sapiens OX=9606 GN=WBP2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007183 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02893 all species →	GRAM	GRAM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044852 all species →	Family	WW domain-binding protein 2-like	Interproscan
IPR004182 all species →	Domain	GRAM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31606 all species →	WW DOMAIN BINDING PROTEIN 2, ISOFORM E	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22524	WBP2; WW domain-binding protein 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068762282.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

223.6Max TPM

136.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	136.28	223.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	223.55
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	207.84
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	206.99
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	192.14
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	189.03
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	183.82
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	182.21
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	179.22
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	175.06
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	169.89
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	167.06
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	166.71
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	165.22
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	164.43
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	163.66
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	160.97
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	160.53
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	158.55
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	152.43
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	151.85
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	151.68
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	150.66
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	150.10
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	150.03
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	146.50
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	145.95
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	127.05
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	121.34
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	120.94
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	120.73
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.