Gene detail

Detailed information of XP_068762397.1 in Montipora capricornis

Genomic Location: chr8:37259211...37272157
NR annotation: XP_029189972.2, caprin-1-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_068906296.1

tgcgtccgccatcttgaaggaCTTTCCTAATATTTCCCATGATGCCACTGGGAACCGCACCCCTTCAGAATACTGGTAATGACGTCAGACAGAGCACATGGTACACAGACAGCAAAAAAAGAGATTTGAGCTTGTAACTCGGAGTTAGTGACTACTATGCCAAGTGCTTCATCGCAATCTTCCATGCAGATCCAAGCGCCGATGGAAAAGGCCGACGCTGCTAAGGCTGTCCTGAGTTTCTTGGAGAAGAAACTCCGTAATCTGGAGAAACGCAAGACAAAACTTAGTATGTACAAGACCATGGTGGAAGAAGGAAAAGAGCTAAATGAAGATCAAAAGCTTGCAGTTGGCCAGTTGAATCGCTTGGAACAGAATGTGGAATTTTTCAAGGAAATTCAGAAGAACCTTTCTCAAGTCTGCACTGAACAGCAAATGCTGCAAAAGAAACTTGCCAAGAGCGAACAAGCTGCTCAAGTAACCGCCCAGCGCGAGAGGGACATCTCCAGGGTCTGCCAGGTACTGGAGCTGCAGTCCTTGATGGACAACTTGTCAGAAGATGTGAGGGTGGATTTTCTCAATGGGACAAATGGTGCTGTGGTTGTGACTGCTGAGAAGTTTGTTCAAATTGATGACTTCTACAAACTGATTACTCCAAATCCTGAAGAGGAAAAGCCAATGAAGGAACAACAACTGGAAGCCAGTCAGCACATTGTGAAGTTTCTTAATGCCCTGAATCATCCTGTTGTGGGAACAACTTACAGAGAACTTAACAAGCTGGTTACATCAATCAAGAGTTGTGGATATTTTGAGCAGGAACAAGCTgaggaggaagaagaaggagCAGCAGAAGAGGAGGAAGCTGCCACAGTTGAAGACTCTAACAAACAGGAAGGATCAGTCGATGATGATGTACCATCCACTGAGGACCAGACAAATGAGACCACAGATGGCAGCACAGAAACCCATTTAAATGGAGGAAGTCCTGCGACATCTGATACAAAGGATGTGGCGGCATTTGCTTCCAATGAGCACGGCCTGAATTTTCTTAGTGAATCAGAAGTGGAATCCAAACAACAACAGGATGAAGATGAGCCGCAGGCTCCAGTTGAAAATCAACCTCAGGCTGCCACAACCCAGAACACCGGGATCAGTGCTCAAGGGGGAGATGAGGAATGGGTTGAACAAGGAAACAGTGGATATCAAGAAAGCGACAGCAGTGGCTTTAACACAGTTCAGCATTCTAATGGCTTCCCGCGTGGGGGCCGCGGAGGTCGCGGATATTACCGCAGGGGAGATGGTGGTTTCAATCGCCGTGGAGGCCCACCAGGGGAAAGAGGGAATAGACGTGGCGGTAGAGGCGGTTACGGTGGACCCCCTagaggaggaagaggaggatTTGGACAGCAACAGGATAATTACCAGAGATCTGGAAGAGGTGGGCGAGGTGGACCTTTCAGAGGAGGGCGGGGAGCGTCGCGTGGTCGTGGCCCTCCTCAGCAGTAACAGCTTTTACGCAGCTTAACTTTGAAACTTACCTTCACAATTTTAGGAAGATTTTGATGGAGCTTTTGGCATAAAGTTACAACAACTGACCTGGTTACAAGCTGATGGGCTTGTGTGGGAGGTCATGTGCATGGTCAATTTGAAGTGACTTGTGGTAGTTATGGGAGAATCAACTTGACAAGACAAAGAAAGACCCAGGGTTTTTCACGTTCATAATTCTTCAAGTACACAAGACTTCTATCGTCTCTTGGGATGAACTGTCTATTCTGTTCATTAAAAACTCGaaagaaaatagcaaaaaaCGGCACAATCGTGTCGACGCTATTGTTGTTTGGCTGGCCCTTTggaatatttaaaataaaaagaaattggaAGTACTTACCTTACgggaaaaaacattttttttaagttcCTGCAATAAGAAGAGAATCGTGGAAGAAACTctcagtgaattttttttcattgtacaAAACGTGAATCGAAATTGCGTGGCACTGAAACTTTTGATTCATGAATGTTGTAAATGGTTTCAACCAGGAATTGTTGGAAATACTTTCTTCTGTGATAAGGAAAACGGAACACTTAATGCAAGTGATGACTTCTCTGTGGGCTTTTTCAGTTCTTGATAAGTAATAAAATATGGGAGTTTTGCCACTTGGAGCAATTTGCTACTCTTAAGGGTTCTAAAGGATTCTAATTCTTTCAAAGTAGAAAAGAACTGTTTTGTTATTAATTTAAGTTCTTCTTTGGCTATTGATCATGATGATAATTTTGTTTCATAAGAGAGGCTACACAAAGGCAGGGTGGATTCTTTTCTGTGAAACTACTGTAATGTAAATAGAATAAACTGTTCGTTGCATAGGATTATAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14444	Caprin-1 OS=Homo sapiens OX=9606 GN=CAPRIN1 PE=1 SV=2
Q1LZB6	Caprin-1 OS=Bos taurus OX=9913 GN=CAPRIN1 PE=2 SV=1
Q60865	Caprin-1 OS=Mus musculus OX=10090 GN=Caprin1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007202 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18293 all species →	Caprin-1_dimer	Caprin-1 dimerization domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041637 all species →	Domain	Caprin-1 dimerization domain	Interproscan
IPR028816 all species →	Family	Caprin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22922 all species →	GPI-ANCHORED PROTEIN P137	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18743	CAPRIN1, GPIAP1; caprin-1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068762397.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

30TPM > 0

1Conditions

197.9Max TPM

109.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	30	109.64	197.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	197.89
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	197.27
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	179.56
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	176.61
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	175.73
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	175.20
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	158.47
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	156.63
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	147.08
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	145.35
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	144.87
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	144.69
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	138.73
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	137.40
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	128.84
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	117.17
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	116.53
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	113.82
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	113.00
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	112.60
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	111.86
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	111.77
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	109.08
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	106.99
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	105.13
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	98.06
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	91.11
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	81.96
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	79.07
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	74.46
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.