Gene detail

Detailed information of XP_068762502.1 in Montipora capricornis

Genomic Location: chr8:4979375...5015353
NR annotation: XP_015768288.1, PREDICTED: sorting nexin-14-like isoform X1 [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC138060565

ATGAACAGATTTGAGCGGCGCGATTTTGAAAGCATTCGACCTGTGCTGGCCTCAGGAGCAGTATTCCTCTTTATCTTTACATTTCAATTTTACCGGTGTCCACCTTTCCTTTTTGGAATATGGGTTCTTGCTTTGGGTGTGGCAGTCGGGTTTGTTGTGTTCAGCCTTAGCCCAGTTCTACCTTCTTTCTTATTACACTGGGGCCCACGAAAAAAGGGTTATGAGGATGACAATCAGATGAAGGCAGTCCCACCAGGGACTTGCACTATTTGTGGAAACAACAAATGTCAGCGTCATAGACCTGAAATCTCAAGATCCAAGCTAAAGCCATGGGAAGATATCCTTATCCCAGAATCAGTAGATGCAGCATTACAAGAGTTTCTTGGCCTTCTTCTTCAAAATAATATCTACAGCTGGTACAGAGAACTAAGCTGTAGTGAAACATGTGTTGATGAACTTAGAACAAGCCTCAGATATATGGCAGCTGTGCTGCTAAAAAGAATACGTAAGATTGATATTCCAACTTTGGTCATAGATGCTCTTGGAAAAGAAGGCCTAAAGCATTTAGAGACATACCTTACAGCTAAAGATAAAGGTGCACTGTCTCGTTTGACCAGCACTCAGACTGTCATTCTTGAAGAGTTTAGTCCTAAAATGCACTGTGCATTGCAGAATCGTGCTATGGAGCTTCAGTATTTGAGGAAACTGTCAGAGTCTATCATTCCTTTCCTATTGCCACCTCATTCCTTACAGTGCAGGAGTCTTCTATCATTATTGCGAGAACTGCTGGCCAGTGCAGTATTCCTTCCTGCAACTGACAAGCTTTCAGATCCTGATTTTGTGAACAGTCTTCTACTTCTCTTCTTAGACAAAGAACCAATGGTTGCCTCTGGTGAGCCAGCAAGTCCAAAAGTTCCTTTACTGGCAAAATTTGGGAAAGCGAGAGCTCCTCTTATAAACTCGGCGTTACATTTGTCTATAGCAGATATACTCCATTCGCAGACTGCGCTGTTTCCCTTTATGCAGTTTATGAAAAGTGAAGGAGCATTAAACATTCTTCAGTTCTGCCTCACTGTTGAGGATTTCAATAAGCGGGTGTTCGTCCCCGAACTGACAAAGGAAGAAGAAGAAGCCCTCGTAAAAGAGGTTCAGGAAATCTTCCGTTCTTATTTTGACACTGGGGCAGTTGACAGAATTAACTTTGAAAGTGAAATCGTCCAAGGACTGAAAGCTTGTATAAATAACCCAGTTGAAGAGTCAATGGAAAGATTGAAAATGGCAACGTTATTGTCAAGAGCATGCGAATATGCCTACAATCTACTGGAGTCGACATTTCTTCCTCTCTTTTATCAGAGTGATGATTACTTTTCTATGCTCTGTGGGAGTCGTCTGCCAGCCAAGCCCTTGTATAAACCAGCCTCAAGGGTTTCAAAAAGAAAGTTCGATCCTTTGGCAGAGTTTTCTAGGCTGGCCGGGAAACTTAAAGACAAAGTTATGAATCCAAACAAAGATGATTCGCCGTTCGAGGATGACCCGTTTGATATTCCGGACACACCTCCGGAATACAACGTTGAAAGCGAAGGAGAGGAAGAGGAATTAGAAGAAGAGGAGTTACGTGACCTTAGCATGTGGAAGATAACCATTCCTCACGTTATCATGGAAACAAAACAGAAATGTATGTTCATCATATCAGTGGATAGAAAGGACGTGACGGAAGCATCTAGATGGGACGTTGCACGGAGATACAAAGAGTTCTTCGTTCTTCAGAGCAAGTTAAAGGAATTTCACGGTGAGATCGATGACTCACTTCTCCCAGCCAAACGCAATTCTTCAAGATCTCTCACGCAGAAGAGCAGTTCCAATTACTTTGAGGCCTGCCGCGTACAATTTGAGAAATATTTGCAGTATTTATGTTCCAACCCACTACTTAAAGGAAGTGCGTTGCTTTTTAACTTTCTTTCGCCTGACAAAGAATTCAGTCAAATGTTTGGTCCGGAAAAAGTCGGTGATATAGCGGGGAAGAAAATCAAGTCCATGACAACTATACTCAAGAAAGAGAGAGGACAGAACCTTGATTCTTTTCTACAGGCGTTTTTGTCCTCTACAGTGGAACCAACAAAACGAAAACCTCTTCCCAAGGGCCTCCTAGAACAATCAAAGCGCACTGAGGAGGGGCTTTATCCCATAAGAAGGAAAAGCTCGAATAACACACGTTTCAAAGCAGAAGCATCAGGCAAACCTCAGTTGGAAGTGACCGGTGCAACGGACTATATTCTTTTTCTTGCTCATCGTCTATTCAAAGTGCCGTCCTTCCTGTACAGTTTATTAGTGTGTGGGAAAGTGGCTTTTCAGCATACACTGGATACCTACGCAGACAGATACCTAGCTCATAAAGTGGATTTGTTAACGAGTGAACATCGGGTCGTTATTATTATTCATCTTCTTAGAGACGCCATTTTCTTTGATCAGGATCCTCCAAGAACGGACACGCAAAAGTTAGAGAGGAGAGAGCAGACGCTGAAAGAAATGCTAGATTTCATACCAGACCCGGCCGTGCGCGTTATGGGTACTGACCGACACAAAGCAGGAATCACTTCGTTGTTTGAACTTCTACAGCAACCAAGGTTAAATAAGCAGCTGACATATGTTTTACTTGATTGCGTGATGGGAGAGATTTTTCCGGAACTGAAGGAGAGCGAGCTTTTCCCGGCAGACGATCTTTCAAGTCACTCGTGA

Transcript

rna-XM_068906401.1

AAGAGGACACTCACGACTCACATGATATGAAGGACGGAAGGAATGAACAGATTTGAGCGGCGCGATTTTGAAAGCATTCGACCTGTGCTGGCCTCAGGAGCAGTATTCCTCTTTATCTTTACATTTCAATTTTACCGGTGTCCACCTTTCCTTTTTGGAATATGGGTTCTTGCTTTGGGTGTGGCAGTCGGGTTTGTTGTGTTCAGccTTAGCCCAGTTCTACCTTCTTTCTTATTACACTGGGGCCCACGAAAAAAGGGTTATGAGGATGACAATCAGATGAAGGCAGTCCCACCAGGGACTTGCACTATTTGTGGAAACAACAAATGTCAGCGTCATAGACCTGAAATCTCAAGATCCAAGCTAAAGCCATGGGAAGATATCCTTATCCCAGAATCAGTAGATGCAGCATTACAAGAGTTTCTTGGCCTTCTTCTTCAAAATAATATCTACAGCTGGTACAGAGAACTAAGCTGTAGTGAAACATGTGTTGATGAACTTAGAACAAGCCTCAGATATATGGCAGCTGTGCTGCTAAAAAGAATACGTAAGATTGATATTCCAACTTTGGTCATAGATGCTCTTGGAAAAGAAGGCCTAAAGCATTTAGAGACATACCTTACAGCTAAAGATAAAGGTGCACTGTCTCGTTTGACCAGCACTCAGACTGTCATTCTTGAAGAGTTTAGTCCTAAAATGCACTGTGCATTGCAGAATCGTGCTATGGAGCTTCAGTATTTGAGGAAACTGTCAGAGTCTATCATTCCTTTCCTATTGCCACCTCATTCCTTACAGTGCAGGAGTCTTCTATCATTATTGCGAGAACTGCTGGCCAGTGCAGTATTCCTTCCTGCAACTGACAAGCTTTCAGATCCTGATTTTGTGAACAGTCTTCTACTTCTCTTCTTAGACAAAGAACCAATGGTTGCCTCTGGTGAGCCAGCAAGTCCAAAAGTTCCTTTACTGGCAAAATTTGGGAAAGCGAGAGCTCCTCTTATAAACTCGGCGTTACATTTGTCTATAGCAGATATACTCCATTCGCAGACTGCGCTGTTTCCCTTTATGCAGTTTATGAAAAGTGAAGGAGCATTAAACATTCTTCAGTTCTGCCTCACTGTTGAGGATTTCAATAAGCGGGTGTTCGTCCCCGAACTGacaaaggaagaagaagaagcccTCGTAAAAGAGGTTCAGGAAATCTTCCGTTCTTATTTTGACACTGGGGCAGTTGACAGAATTAACTTTGAAAGTGAAATCGTCCAAGGACTGAAAGCTTGTATAAATAACCCAGTTGAAGAGTCAATGGAAAGATTGAAAATGGCAACGTTATTGTCAAGAGCATGCGAATATGCCTACAATCTACTGGAGTCGACATTTCTTCCTCTCTTTTATCAGAGTGATGATTACTTTTCTATGCTCTGTGGGAGTCGTCTGCCAGCCAAGCCCTTGTATAAACCAGCCTCAAGggTTTCAAAAAGAAAGTTCGATCCTTTGGCAGAGTTTTCTAGGCTGGCCGGGAAACTTAAAGACAAAGTTATGAATCCAAACAAAGATGATTCGCCGTTCGAGGATGACCCGTTTGATATTCCGGACACACCTCCGGAATACAACGTTGAAAGCGAAGGAGAGGAAGAGGAATTAGAAGAAGAGGAGTTACGTGACCTTAGCATGTGGAAGATAACCATTCCTCACGTTATCATGGAAACAAAACAGAAATGTATGTTCATCATATCAGTGGATAGAAAGGACGTGACGGAAGCATCTAGATGGGACGTTGCACGGAGATACAAAGAGTTCTTCGTTCTTCAGAGCAAGTTAAAGGAATTTCACGGTGAGATCGATGACTCACTTCTCCCAGCCAAACGCAATTCTTCAAGATCTCTCACGCAGAAGAGCAGTTCCAATTACTTTGAGGCCTGCCGCGTACAATTTGAGAAATATTTGCAGtATTTATGTTCCAACCCACTACTTAAAGGAAGTGCGTTGCTTTTTAACTTTCTTTCGCCTGACAAAGAATTCAGTCAAATGTTTGGTCCGGAAAAAGTCGGTGATATAGCGGGGAAGAAAATCAAGTCCATGACAACTATACTCAAGAAAGAGAGAGGACAGAACCTTGATTCTTTTCTACAGGCGTTTTTGTCCTCTACAGTGGAACCAACAAAACGAAAACCTCTTCCCAAGGGCCTCCTAGAACAATCAAAGCGCACTGAGGAGGGGCTTTATCCCATAAGAAGGAAAAGCTCGAATAACACACGTTTCAAAGCAGAAGCATCAGGCAAACCTCAGTTGGAAGTGACCGGTGCAACGGACTATATTCTTTTTCTTGCTCATCGTCTATTCAAAGTGCCGTCCTTCCTGTACAGTTTATTAGTGTGTGGGAAAGTGGCTTTTCAGCATACACTGGATACCTACGCAGACAGaTACCTAGCTCATAAAGTGGATTTGTTAACGAGTGAACATCGGgtcgttattattattcatcTTCTTAGAGACGCCATTTTCTTTGATCAGGATCCTCCAAGAACGGACACGCAAAAGTTAGAGAGGAGAGAGCAGACGCTGAAAGAAATGCTAGATTTCATACCAGACCCGGCCGTGCGCGTTATGGGTACTGACCGACACAAAGCAGGAATCACTTCGTTGTTTGAACTTCTACAGCAACCAAGGTTAAATAAGCAGCTGACATATGTTTTACTTGATTGCGTGATGGGAGAGATTTTTCCGGAACTGAAGGAGaGCGAGCTTTTCCCGGCAGACGATCTTTCAAGTCACTCGTGACGACTCAGAAACAACTCGGTGTCCCAGCAAACACAAACACGGGTTGGCCGGAGTGTCGAGATAAAAATTGTCTAAGGAATATGGAggaatatatttttcaaactcGTGTACAAATGTAATGATAAGAAAATGCTTCCACAGAGCGAAATCTTTCTAACGTGTAACTCCAAAGTTTCAcgacaaataaattatttttgtaaagatTATTCAGTGAAATAAAGCCGGTGAAAAGTCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R903	Sorting nexin-14 OS=Pongo abelii OX=9601 GN=SNX14 PE=2 SV=1
Q8BHY8	Sorting nexin-14 OS=Mus musculus OX=10090 GN=Snx14 PE=1 SV=2
Q9Y5W7	Sorting nexin-14 OS=Homo sapiens OX=9606 GN=SNX14 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002988 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08628 all species →	Nexin_C	Sorting nexin C terminal	Family	Interproscan
PF00615 all species →	RGS	Regulator of G protein signaling domain	Domain	Interproscan
PF02194 all species →	PXA	PXA domain	Family	Interproscan
PF00787 all species →	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036305 all species →	Homologous_superfamily	RGS domain superfamily	Interproscan
IPR003114 all species →	Domain	Phox-associated domain	Interproscan
IPR013937 all species →	Domain	Sorting nexin, C-terminal	Interproscan
IPR016137 all species →	Domain	RGS domain	Interproscan
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR044926 all species →	Homologous_superfamily	RGS, subdomain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22775 all species →	SORTING NEXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17926	SNX14; sorting nexin-14	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068762502.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

13.2Max TPM

4.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	4.72	13.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	13.19
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	13.09
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	12.42
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	10.25
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	8.86
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	8.39
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	8.31
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	8.30
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	6.86
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	6.85
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	6.79
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	6.72
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	6.65
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	5.41
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	5.38
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	5.16
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	5.08
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	4.95
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	4.70
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	4.68
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	4.00
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	2.79
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	2.61
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	2.53
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.99
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	1.81
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	1.48
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	0.78
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.