Gene detail

Detailed information of XP_068762591.1 in Montipora capricornis

Genomic Location: chr8:45297591...45305440
NR annotation: XP_044185064.1, regulator of microtubule dynamics protein 1-like [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R8E4	Regulator of microtubule dynamics protein 1 OS=Pongo abelii OX=9601 GN=RMDN1 PE=2 SV=1
Q9DCV4	Regulator of microtubule dynamics protein 1 OS=Mus musculus OX=10090 GN=Rmdn1 PE=1 SV=2
Q32KL4	Regulator of microtubule dynamics protein 1 OS=Bos taurus OX=9913 GN=RMDN1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001272 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21033 all species →	RMD1-3	Regulator of microtubule dynamics protein 1-3	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR049039 all species →	Repeat	Regulator of microtubule dynamics protein 1-3, alpha helical repeats	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16056 all species →	REGULATOR OF MICROTUBULE DYNAMICS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005876 all species →	Cellular Component	spindle microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0097431 all species →	Cellular Component	mitotic spindle pole	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_068762591.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068762591.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

27TPM > 0

1Conditions

42.9Max TPM

16.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	27	16.64	42.87

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	42.87
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	42.83
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	41.04
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	40.87
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	39.35
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	38.13
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	38.07
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	37.25
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	36.41
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	36.13
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	35.76
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	32.86
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	28.77
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	26.70
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	11.21
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	9.72
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	9.53
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	9.05
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	7.72
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	7.58
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	7.43
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	5.46
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	4.51
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	3.76
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	2.91
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	1.70
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	1.46
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.