Gene detail

Detailed information of XP_068762645.1 in Montipora capricornis

Genomic Location: chr8:11875782...11892531
NR annotation: XP_015753787.1, PREDICTED: dynein light chain 4, axonemal-like [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32KN5	Dynein axonemal light chain 4 OS=Bos taurus OX=9913 GN=DNAL4 PE=3 SV=1
O96015	Dynein axonemal light chain 4 OS=Homo sapiens OX=9606 GN=DNAL4 PE=1 SV=1
Q9DCM4	Dynein axonemal light chain 4 OS=Mus musculus OX=10090 GN=Dnal4 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002873 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01221 all species →	Dynein_light	Dynein light chain type 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001372 all species →	Family	Dynein light chain, type 1/2	Interproscan
IPR037177 all species →	Homologous_superfamily	Dynein light chain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11886 all species →	DYNEIN LIGHT CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007017 all species →	Biological Process	microtubule-based process	Interproscan
GO:0030286 all species →	Cellular Component	dynein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10412	DNAL4; dynein axonemal light chain 4	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068762645.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

29TPM > 0

1Conditions

111.2Max TPM

39.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	29	39.03	111.23

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	111.23
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	73.26
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	63.27
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	60.74
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	60.47
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	59.71
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	59.46
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	58.96
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	57.72
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	56.29
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	52.51
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	52.03
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	51.38
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	50.84
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	50.82
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	50.69
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	48.97
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	43.02
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	42.94
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	39.91
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	38.94
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	34.66
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	33.30
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	30.66
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	30.48
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	25.62
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	23.80
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	21.74
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	21.57
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.