Gene detail

Detailed information of XP_068762646.1 in Montipora capricornis

Genomic Location: chr8:11854614...11861134
NR annotation: XP_015753785.1, PREDICTED: probable splicing factor 3B subunit 5 [Acropora digitifera]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q56K13	Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1
Q9BWJ5	Splicing factor 3B subunit 5 OS=Homo sapiens OX=9606 GN=SF3B5 PE=1 SV=1
Q9VHI4	Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011357 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07189 all species →	SF3b10	Splicing factor 3B subunit 10 (SF3b10)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009846 all species →	Family	Splicing factor 3B subunit 5/RDS3 complex subunit 10	Interproscan
IPR017089 all species →	Family	Splicing factor 3B, subunit 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20978 all species →	SPLICING FACTOR 3B SUBUNIT 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005686 all species →	Cellular Component	U2 snRNP	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12832	SF3B5, SF3B10; splicing factor 3B subunit 5	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.