Gene detail

Detailed information of XP_068762779.1 in Montipora capricornis

Genomic Location: chr8:33785178...33791422
NR annotation: XP_029205693.1, mitochondrial inner membrane protease subunit 1-like isoform X1 [Acropora millepora]
Species Montipora capricornis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NLT8	Mitochondrial ATP-independent inner membrane protease subunit 1a OS=Arabidopsis thaliana OX=3702 GN=IMP1A PE=2 SV=1
Q96LU5	Mitochondrial inner membrane protease subunit 1 OS=Homo sapiens OX=9606 GN=IMMP1L PE=1 SV=1
Q9CQU8	Mitochondrial inner membrane protease subunit 1 OS=Mus musculus OX=10090 GN=Immp1l PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001838 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10502 all species →	Peptidase_S26	Signal peptidase, peptidase S26	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019533 all species →	Domain	Peptidase S26	Interproscan
IPR036286 all species →	Homologous_superfamily	LexA/Signal peptidase-like superfamily	Interproscan
IPR052064 all species →	Family	Mitochondrial Inner Membrane Protease Subunit 1	Interproscan
IPR000223 all species →	Family	Peptidase S26A, signal peptidase I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12383 all species →	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006465 all species →	Biological Process	signal peptide processing	Interproscan
GO:0006627 all species →	Biological Process	protein processing involved in protein targeting to mitochondrion	Interproscan
GO:0042720 all species →	Cellular Component	mitochondrial inner membrane peptidase complex	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008236 all species →	Molecular Function	serine-type peptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09647	IMP1; mitochondrial inner membrane protease subunit 1	EC:3.4.21.-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_068762779.1 across 36 RNA-seq samples of Montipora capricornis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

36Samples

28TPM > 0

1Conditions

78.6Max TPM

39.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Polyps	36	28	39.09	78.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR12786897	Polyps	Polyps	OA3 day0	not recorded	SRP199550	78.56
SRR12786898	Polyps	Polyps	OA3 day0	not recorded	SRP199550	73.75
SRR12786896	Polyps	Polyps	OA3 day0	not recorded	SRP199550	73.03
SRR12904781	Polyps	Polyps	not recorded	not recorded	SRP199550	68.65
SRR27940193	Polyps	Polyps	not recorded	not recorded	SRP199550	63.72
SRR12710857	Polyps	Polyps	OA3 day9	not recorded	SRP199550	62.48
SRR12959229	Polyps	Polyps	E3 day3	not recorded	SRP199550	61.55
SRR12904782	Polyps	Polyps	not recorded	not recorded	SRP199550	58.90
SRR12959184	Polyps	Polyps	E3 day0	not recorded	SRP199550	58.53
SRR12710855	Polyps	Polyps	OA3 day9	not recorded	SRP199550	53.47
SRR12959182	Polyps	Polyps	E3 day0	not recorded	SRP199550	53.44
SRR12904783	Polyps	Polyps	not recorded	not recorded	SRP199550	51.22
SRR12959183	Polyps	Polyps	E3 day0	not recorded	SRP199550	51.10
SRR27940191	Polyps	Polyps	not recorded	not recorded	SRP199550	50.83
SRR12710858	Polyps	Polyps	OA3 day9	not recorded	SRP199550	50.62
SRR12710847	Polyps	Polyps	OA3 day3	not recorded	SRP199550	46.68
SRR12959227	Polyps	Polyps	E3 day3	not recorded	SRP199550	44.17
SRR12710846	Polyps	Polyps	OA3 day3	not recorded	SRP199550	41.09
SRR12710848	Polyps	Polyps	OA3 day3	not recorded	SRP199550	39.78
SRR12959190	Polyps	Polyps	E3 day21	not recorded	SRP199550	39.42
SRR12959203	Polyps	Polyps	E3 day15	not recorded	SRP199550	38.78
SRR12959216	Polyps	Polyps	E3 day9	not recorded	SRP199550	38.72
SRR12959215	Polyps	Polyps	E3 day9	not recorded	SRP199550	38.69
SRR12959189	Polyps	Polyps	E3 day21	not recorded	SRP199550	38.35
SRR12959201	Polyps	Polyps	E3 day15	not recorded	SRP199550	34.21
SRR12959202	Polyps	Polyps	E3 day15	not recorded	SRP199550	33.40
SRR12959188	Polyps	Polyps	E3 day21	not recorded	SRP199550	32.41
SRR12959214	Polyps	Polyps	E3 day9	not recorded	SRP199550	31.73
SRR12807381	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12849113	Polyps	Polyps	OA3 day0	not recorded	SRP199550	0.00
SRR12927880	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR12959230	Polyps	Polyps	E3 day3	not recorded	SRP199550	0.00
SRR12963484	Polyps	Polyps	E3 day0	not recorded	SRP199550	0.00
SRR27940192	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9129316	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00
SRR9613519	Polyps	Polyps	not recorded	not recorded	SRP199550	0.00

Source: CnidoSite RNA-seq expression matrices (MCAPR_TPM, StringTie quantification over 36 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.