Gene detail

Detailed information of XP_073227830.1 in Porites lutea

Genomic Location: chr12:1618231...1625839
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140921717

ATGCAAACCTTTTTGCCAGTAGACAGTGTTTACCAAGTTTCGTTGGCGTTAAACATTAATCTTGATGATGTTCGTTTGACAGCCGACCATAGTGAATCTGTGACTCTAACCTGTGTGGCTAGTTACAGCCCTCGACAACCCTCTTGGTATAGTTGGAGAAAAGATGGAACGGGGCTGTCTGACACAACCTCCTCTCTTACCATACCATACAACAGTGCCAGTAATATATACAGTAACTCTTGTGCAAGAAAGCTCGAATCACCTAGTGAAGTCCAGTGTAATTCAACCTACCAATGCTCTGCGTCACTTTCTGGAATACAAAGCAGGCATTTAACCACTGCAAATGTTATTGTGTCTTTAAATAAACCAGGCCAACCGGTTGTTCAAGTTAATCCAAGTGACATTCATGCAAGATCAGCATTAGTCACATGGTCGTATAGTCCTGGAGGGGATGAAATGCCTGTTACTGCTTACAATCTTGAGTATCGAAATAGTTCTTCTATACATGATATACCGTTGGGACTTGTATTAAGTAAACGGATTTTCTACCTCAAACCATACACAGCCTACAGTGTTAGGTTGATAGCCACAAGTGTCTTGGGAAAGGGTCTGTGGAGTAATTTCCAGAATTTCACAACAAAAACTGCCAAGCCTGAAATCGATGTCCAGATCCTAAGTGTGACAAGTCCTACTTCGCAGTCAATTCTTGTGAAATGGCAGACACCAAGCATCACCAATTTAAACGGACCCTTTAGAGGGTACAGCATTGAATACATGGAAGCAGAGAAACCTTCCTCGAAAGTCAATGTCAGTGGATCAACCCCCAGTCACACTTTACAGAACCTGAAGAAATGGACAGTATATTTCATTAAAATCGCAGTCAGTAATGGCGACTTTCTTGGTCCACCGGGTCCTGAAAAGCAAGCTCGGACGCTAGAAGATGCCCCCAGCAAACCACTGAATCTATCGTTCACCTTCCAAAAGCCAAGTGAAATAGCGATGCCGAGAATGACGGTCCACTGGCATCAACCTGCTGAACAAAATGGTATCATCAGGAAATATAGATTAGTTTTGACCCATACCTTTGATGGAAGACAGACTACCATTACAAGTGAAACAGATAATCAGACCTTTAGCTACAGTCTAGATGTTTTCGGTGGAACACAGTACAGTGTTGAGATTTGGGCAGAAACTATTAAACCTGGGCCAACGCTAACTGGAACTAAACAAGTGCCAGAATACAAACCAAGCGCGCCACCTCAAAACATAACCTCTGAAAAGATGAACGAAACAACTTACAAAATAAGTTGGAATCTTCTTCCCAGAGACAAGACCAATGGTAGAGTGATCGCATATGAAGTGAATCAGACAACGCTTTCTGTCACATGCACTTCAAGATCCGCGTCCACTCCGTCAGTTCTACAAAACACAACAGACGCATTTATCGTTTTAACTGGTCTCTCATCGTGTTCTGTTTACAAAGTTGAAGTGCGTGCCTACACTTCTGCTGGTCCAGGAGTCTTTGGTAGACTTACTCGTAACATCGCGACTTCAGTTCCTGGTGAACCAACTGACGTGAAGACGGAAAATCCTGGTAAACGGAACATAACCTTGCAGTGGGGTAAACCGAAACTACACGGGGATGCTGTACGGCGTTACAAGATAATCTATAAAGGTACAAAGGATTATTATCCAGAATTTAAACCGCAAACTGGAATTCAAGAAACAGAGTCACCGACGTTAACAATGACAATCACCAATCTGGTCCCTCGTACAAAGTATGCTTTTGTTGTGACGGCTGAAACCTACTGTGGGTACGGAGGTAACAGTTCTATCGCGCAGGGAAGCACAGAAGTGGATGCTCCTGTGGCGCCTGTAAACCATGACGTCCCAGTAATCGAAACAAAAGAAACATCTGTGAATGTCAAAGTTTGGCATGCGTTACAAACCAATGGTCCAATCAGCGATTATCAAGTTTTGGTGCATAAAGTGAATGATTGGTGTGACGAGGTGTCTGACTGGGAGGCACTTGAATCAGATGTGTATATTGCTGCACAAATTCGCGCTGATTCTGTGAATCCATCCATGGTTTTTGTTGTGGGAGATGGTAAAACCAAAGACGGTTATGAGAACAAGCAACTGTCAGATGGTCAAAAATACAAGATATATTCCAGAGGATTGGGTCTCCGCGCAACCAAGAAACGTTCTGTGGATAAAAACTACCTGCTTGGTAAAGCAAGTCTAATTGCCAAAGTTCAAATAGAGAGAGGTAAGATTCTCAGTGTTTTTAATTTTGTGTTGAGATAG

Transcript

rna-XM_073371729.1

ATGCAAACCTTTTTGCCAGTagacagtgtttACCAAGTTTCGTTGGCGTTAAACATTAATCTTGATGATGTTCGTTTGACAGCCGACCATAGTGAATCTGTGACTCTAACCTGTGTGGCTAGTTACAGCCCTCGACAACCCTCTTGGTATAGTTGGAGAAAAGATGGAACGGGGCTGTCTGACACAACCTCCTCTCTTACCATACCATACAACAGTGCCAGTAATATATACAGTAACTCTTGTGCAAGAAAGCTCGAATCACCTAGTGAAGTCCAGTGTAATTCAACCTACCAATGCTCTGCGTCACTTTCTGGAATACAAAGCAGGCATTTAACCACTGCAAATGTTATTGTGTCTTTAAataaACCAGGCCAACCGGTTGTTCAAGTTAATCCAAGTGACATTCATGCAAGATCAGCATTAGTCACATGGTCGTATAGTCCTGGAGGGGATGAAATGCCTGTTACTGCTTACAATCTTGAGTATCGAAATAGTTCTTCTATACATGATATACCGTTGGGACTTGTATTAAGTAAACGGATTTTCTACCTCAAACCATACACAGCCTACAGTGTTAGGTTGATAGCCACAAGTGTCTTGGGAAAGGGTCTGTGGAGTAATTTCCAGAATTTCACAACAAAAACTGCCAAGCCTGAAATCGATGTCCAGATCCTAAGTGTGACAAGTCCTACTTCGCAGTCAATTCTTGTGAAATGGCAGACACCAAGCATCACCAATTTAAACGGACCCTTTAGAGGGTACAGCATTGAATACATGGAAGCAGAGAAACCTTCCTCGAAAGTCAATGTCAGTGGATCAACCCCCAGTCACACTTTACAGAACCTGAAGAAATGGACAGTATATTTCATTAAAATCGCAGTCAGTAATGGCGACTTTCTTGGTCCACCGGGTCCTGAAAAGCAAGCTCGGACGCTAGAAGATGcCCCCAGCAAACCACTGAATCTATCGTTCACCTTCCAAAAGCCAAGTGAAATAGCGATGCCGAGAATGACGGTCCACTGGCATCAACCTGCTGAACAAAATGGTATCATCAGGAAATATAGATTAGTTTTGACCCATACCTTTGATGGAAGACAGACTACCATTACAAGTGAAACAGATAATCAGACCTTTAGCTACAGTCTAGATGTTTTCGGTGGAACACAGTACAGTGTTGAGATTTGGGCAGAAACTATTAAACCTGGGCCAACGCTAACTGGAACTAAACAAGTGCCAGAATACAAACCAAGCGCGCCACCTCAAAACATAACCTCTGAAAAGATGAACGAAACAACTTACAAAATAAGTTGGAATCTTCTTCCCAGAGACAAGACCAATGGTAGAGTGATCGCATATGAAGTGAATCAGACAACGCTTTCTGTCACATGCACTTCAAGATCCGCGTCCACTCCGTCAGTTCTACAAAACACAACAGACGCATTTATCGTTTTAACTGGTCTCTCATCGTGTTCTGTTTACAAAGTTGAAGTGCGTGCCTACACTTCTGCTGGTCCAGGAGTCTTTGGTAGACTTACTCGTAACATCGCGACTTCAGTTCCTGGTGAACCAACTGACGTGAAGACGGAAAATCCTGGTAAACGGAACATAACCTTGCAGTGGGGTAAACCGAAACTACACGGGGATGCTGTACGGCGTTACAAGATAATCTATAAAGGTACAAAGGATTATTATCCAGAATTTAAACCGCAAACTGGAATTCAAGAAACAGAGTCACCGACGTTAACAATGACAATCACCAATCTGGTCCCTCGTACAAAGTATGCTTTTGTTGTGACGGCTGAAACCTACTGTGGGTACGGAGGTAACAGTTCTATCGCGCAGGGAAGCACAGAAGTGGATGCTCCTGTGGCGCCTGTAAACCATGACGTCCCAGTAatcgaaacaaaagaaacatctGTGAATGTCAAAGTTTGGCATGCGTTACAAACCAATGGTCCAATCAGCGATTATCAAGTTTTGGTGCATAAAGTGAATGATTGGTGTGACGAGGTGTCTGACTGGGAGGCACTTGAATCAGATGTGTATATTGCTGCACAAATTCGCGCTGATTCTGTGAATCCATCCATGGTTTTTGTTGTGGGAGATGGTAAAACCAAAGACGGTTATGAGAACAAGCAACTGTCAGATGGTCAAAAATACAAGATATATTCCAGAGGATTGGGTCTCCGCGCAACCAAGaAACGTTCTGTGGATAAAAACTACCTGCTTGGTAAAGCAAGTCTAATTGCCAAAGTTCAAATAGAGAGAGGTAAGATTCtcagtgtttttaattttgtgttgAGATAGACTTTCTTTAACACTGTTTAAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR051622 all species →	Family	Receptor-type Tyrosine-protein Phosphatases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24051 all species →	SUSHI DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05695	PTPRF, LAR; receptor-type tyrosine-protein phosphatase F	EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.