Gene detail

Detailed information of XP_073227960.1 in Porites lutea

Genomic Location: chr12:1453167...1456408
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140921860

ATGAGGCGCCTTGCTGGGTGGTATTTCGCCGCGCTATGGATTTCCTGGCTGAGCTGTTCAAGTACCTCCGAGTTAGACCCTACCCAACAACACCAAGCAACTGTCGCCATGGAGACAGCCCAACAGGCAATTGAAATAGCACACGAGGAAATGAAAACATCAATTGAACTCATCAAAGACCTTAGGGAGAGGTCCAAGGAGGCAACAGCAGCAGAACTACTGACGAAGCAGACTAAACTCTCCAAGTACGCTTCCATGGTTGGTAAGGCTCTCCGTGCTGTACAAGCTGCGGCAACAATCGCTAATTTTGCGTTCACGTTTTTCATGCCAAGTGACCTGGATGTCATTACAAGCTTAATAAATGAACGCTTTAAAGAGGTAAATGCCAAACTCGATCGCCTTGGCAAGAAACTCGATGAAATGGAGACATCAATCAAGGCAAACAGCGCATTTAATAACTTTCTGTCTACATGGATTACTTGGGAGAATGCGATCAAGAATGGGGGAAAGAAACTGAAGGATATTCGCAGAGCTATGGGCACTAAAACCAGAAGAATAGAACAAGTAAAACTGGCTGAAGAATTCGTGAATTATTACGAAAATAACAATTTAGATGGCAACGTCCTTAACATGTACAGATTCGCAGCTCTTCCAGAAGGCATAACCGGCCATAACCTCTTTGATTTGTTCATTGATGAATACGGCTGCGACATAACAAAATTGTCGGAGCTAACGTTTTTCATCAAAAACATAATGATCAGCGCTTCCCAGCAGACACTGACATACCACTACTTTAAGGGTGACGCACAGCGGGCCAATCAAGGATTCCAAGAGGTTATGGGGTACTTTTTCAAGATTCGCAGAGAGTTTGATAACAGGGTTTGGGAATGCAAAAAAGACTCTGTTAAAAACGCTGAGAAAGCCAACAAAATTTTGAAGGAGATGAAAGAAAAAAATCAGCCACACGAAATCATCGTTGACGCTATATTTGATGAACTAAAAACACAGCATTCTTGGTACACCTGGGCTGTAGCAGCTGTCAAAAAGGATCGTCCCCATTTTGCTGAACTTCATTGGCGTGGTCAAGCGAAATTTAAGTTAGACAGCGCTGATCCAGAGTACTACGTTGTCTACCAAGACGCCCAGGATCCTCCTAACACCTGTTCGAGCATCCCGCAAATAGGGAATTTATTGGTTTTCAAAGGGTGCGACGGATGCAATCACAATTACATCTACGCAGATGAAAACATCTTGTCTCATAAGACATGCTCAAGACATGAATTGGTAAAAATGGTTCCCGTTGAAGATTTGTGCGAGGAAGCGACATCGCAAGAGCCGTCGTATCGTTCGTGCATTTCAGACTTAAAAAGACAAATCAACGAGTGGGACTTCATTTCATCTACGGTAGATTACTCCGTCAAAAACAAGCACAATTGTGGGTCAGACAAGTGTCAAGGTCACGGTCATTGCTTGGTGATACCATCTACACAAACACACCAATGCATTTGCCGCCCATACTTTGAAGGTGAATCTTGTGAAGTCCCCGCTGACTTTAATGACGACATTGAAAGAATGTTAGCCGATCTGAGGCGGTCGTTTAATATTATGAATGGCGTTCCCACTGCTGTGGACGTATTCTTTTCGGTCAGATCTTTGTCTCGGAACTTAGACGAAGTGGTGAAGAAGATCCAGGATTCCAAGGGTTATACGAACAAAATCGTACAGCACTCACAAGTTATTTACAACATCGAAGACATTGTAGATCTCTACGCAAAACTGCAGACGAACGACGTAACTTTCAATCAATTTGGGCAAGACGTCAACAGGTATTTGCAAACTATCACTACCAGTTTTCAACTAAGGAACAGACTGAAGAAAATGATCCTTGGTCAAGGAATTTTAGACAGCCCAGGCAAAGATATTTATAATTCTTATAAACGGGACTACTTCAATGATAATGGCGGCGCTGGCTGCTCGCCGGGATACAATGAAGCAGTCAAGAGCTTCAGAGACAAGTTGGCCTATTTGGACCAAGCACTCGGTGAAGCTCTGTTGCTCCACAAAAAATGGCTAATGGAAACTAAAGGGACAACTGGATCTCTCCGAGCCAAGTACAAGAAAGAAGCCATGTTCATCCACAACACCTTCAAAGGTCGTCAACGAATCTACAGCCGATACTGGAAGTCTTACAGCTGTGGTAATTTAACAGTTGATGGTGCAAATATTAATTGCAAGGACGAACTAACTTTTGAAGGGATGACACTGACGGTAAAATGCGACAAGCAAAGACAAGCAACAAATGGAACAGTGACTTGCAAAAAGGATGGGGACATCTTGAAATGGGACTCTCAACCAAGATGTATATTTGTTTGGAATACATGGGGTTCATGGGGTCAATGTTCCAAAACTTGCGACTGCGGGACGAGGCAACGCGAAAGGTCTTGTATGGGAACAAACAATACCAACGACTGCGTAAGAGATCAGGGCGGAGTGGATCATGAAACTGAATCCTGTAATACACAAAAATGTTGTTCTGCCCAATACGACAAGTTTGATTGTTCCAACAGCAAATGCATCTCAGCATCTTGGAAATGTGACGGAGATAACGACTGTGGAAACAGCCACGACGAAAACAAAGCCCAATGCCCACACTATATTCGTTCAGGCGATATAGTGGCCCTGAAGGCAACGAAAAAATCTACTCTATGGTTGGGTTGTTGGGGAATCTGCAGGTTGACAAATTGCCCCGGGTATAATCAAGATTTGAGTTCATCCGTATGGAATAGTTGTAATGACAATCTTTTCAGGGTCTATTTGATTGACCACCAGGATGAGAAACCGGTTAAATATGGTGATCAGATACGTCTCGAGAGATTAGGTTTGAATCGCCATGTAAACTGTTGGGGCAGTGGTAACGGATGTGAACTAAGGGAGACCTGCATCGGCAACAGCTGGTGGGACCACAACATGAACTGTCGCGGAGCCGTCTTCTGGATATATTCAACGGATAGCAGTCGCCATGGCAACCAATGTTCATCCAACACTCAAACCAACTGTCGCGGAAAACCCTTACAGCAAGGAGACGAAGTATATCTGCGGTACTCGATTAACGGCAACGTTGCGTGGTGGCTCAGTCATTACGGCGATGGAATCACTACTCAAACCTGTCCTGGTCTTGAAATCACAACGCACGAAAGTGATGGCTGCAGCTCAGAAGGCTGGACCATTTATCATAAATAG

Transcript

rna-XM_073371859.1

ATGAGGCGCCTTGCTGGGTGGTATTTCGCCGCGCTATGGATTTCCTGGCTGAGCTGTTCAAGTACCTCCGAGTTAGACCCTACCCAACAACACCAAGCAACTGTCGCCATGGAGACAGCCCAACAGGCAATTGAAATAGCACACGAGGAAATGAAAACATCAATTGAACTCATCAAAGACCTTAGGGAGAGGTCCAAGGAGGCAACAGCAGCAGAACTACTGACGAAGCAGACTAAACTCTCCAAGTACGCTTCCATGGTTGGTAAGGCTCTCCGTGCTGTACAAGCTGCGGCAACAATCGCTAATTTTGCGTTCACGTTTTTCATGCCAAGTGACCTGGATGTCATTACAAGCTTAATAAATGAACGCTTTAAAGAGGTAAATGCCAAACTCGATCGCCTTGGCAAGAAACTCGATGAAATGGAGACATCAATCAAGGCAAACAGCGCATTTAATAACTTTCTGTCTACATGGATTACTTGGGAGAATGCGATCAAGAATGGGGGAAAGAAACTGAAGGATATTCGCAGAGCTATGGGCACTAAAACCAGAAGAATAGAACAAGTAAAACTGGCTGAAGAATTCGTGAATTATTACGAAAATAACAATTTAGATGGCAACGTCCTTAACATGTACAGATTCGCAGCTCTTCCAGAAGGCATAACCGGCCATAACCTCTTTGATTTGTTCATTGATGAATACGGCTGCGACATAACAAAATTGTCGGAGCTAACGTTTTTCATCAAAAACATAATGATCAGCGCTTCCCAGCAGACACTGACATACCACTACTTTAAGGGTGACGCACAGCGGGCCAATCAAGGATTCCAAGAGGTTATGGGGTACTTTTTCAAGATTCGCAGAGAGTTTGATAACAGGGTTTGGGAATGCAAAAAAGACTCTGTTAAAAACGCTGAGAAAGCCAACAAAATTTTGAAggagatgaaagaaaaaaatcagccACACGAAATCATCGTTGACGCTATATTTGATGAACTAAAAACACAGCATTCTTGGTACACCTGGGCTGTAGCAGCTGTCAAAAAGGATCGTCCCCATTTTGCTGAACTTCATTGGCGTGGTCAAGCGAAATTTAAGTTAGACAGCGCTGATCCAGAGTACTACGTTGTCTACCAAGACGCCCAGGATCCTCCTAACACCTGTTCGAGCATCCCGCAAATAGGGAATTTATTGGTTTTCAAAGGGTGCGACGGATGCAATCACAATTACATCTACGCAGATGAAAACATCTTGTCTCATAAGACATGCTCAAGACATGAATTGGTAAAAATGGTTCCCGTTGAAGATTTGTGCGAGGAAGCGACATCGCAAGAGCCGTCGTATCGTTCGTGCATTTCAGACTTAAAAAGACAAATCAACGAGTGGGACTTCATTTCATCTACGGTAGATTACTCCGTCAAAAACAAGCACAATTGTGGGTCAGACAAGTGTCAAGGTCACGGTCATTGCTTGGTGATACCATCTACACAAACACACCAATGCATTTGCCGCCCATACTTTGAAGGTGAATCTTGTGAAGTCCCCGCTGACTTTAATGACGACATTGAAAGAATGTTAGCCGATCTGAGGCGGTCGTTTAATATTATGAATGGCGTTCCCACTGCTGTGGACGTATTCTTTTCGGTCAGATCTTTGTCTCGGAACTTAGACGAAGTGGTGAAGAAGATCCAGGATTCCAAGGGTTATACGAACAAAATCGTACAGCACTCACAAGTTATTTACAACATCGAAGACATTGTAGATCTCTACGCAAAACTGCAGACGAACGACGTAACTTTCAATCAATTTGGGCAAGACGTCAACAGGTATTTGCAAACTATCACTACCAGTTTTCAACTAAGGAACAGACTGAAGAAAATGATCCTTGGTCAAGGAATTTTAGACAGCCCAGGCAAAGATATTTATAATTCTTATAAACGGGACTACTTCAATGATAATGGCGGCGCTGGCTGCTCGCCGGGATACAATGAAGCAGTCAAGAGCTTCAGAGACAAGTTGGCCTATTTGGACCAAGCACTCGGTGAAGCTCTGTTGCTCCACAAAAAATGGCTAATGGAAACTAAAGGGACAACTGGATCTCTCCGAGCCAAGTACAAGAAAGAAGCCATGTTCATCCACAACACCTTCAAAGGTCGTCAACGAATCTACAGCCGATACTGGAAGTCTTACAGCTGTGGTAATTTAACAGTTGATGGTGCAAATATTAATTGCAAGGACGAACTAACTTTTGAAGGGATGACACTGACGGTAAAATGCGACAAGCAAAGACAAGCAACAAATGGAACAGTGACTTGCAAAAAGGATGGGGACATCTTGAAATGGGACTCTCAACCAAGATGTATATTTGTTTGGAATACATGGGGTTCATGGGGTCAATGTTCCAAAACTTGCGACTGCGGGACGAGGCAACGCGAAAGGTCTTGTATGGGAACAAACAATACCAACGACTGCGTAAGAGATCAGGGCGGAGTGGATCATGAAACTGAATCCTGTAATACACAAAAATGTTGTTCTGCCCAATACGACAAGTTTGATTGTTCCAACAGCAAATGCATCTCAGCATCTTGGAAATGTGACGGAGATAACGACTGTGGAAACAGCCACGACGAAAACAAAGCCCAATGCCCACACTATATTCGTTCAGGCGATATAGTGGCCCTGAAGGCAACGAAAAAATCTACTCTATGGTTGGGTTGTTGGGGAATCTGCAGGTTGACAAATTGCCCCGGGTATAATCAAGATTTGAGTTCATCCGTATGGAATAGTTGTAATGACAATCTTTTCAGGGTCTATTTGATTGACCACCAGGATGAGAAACCGGTTAAATATGGTGATCAGATACGTCTCGAGAGATTAGGTTTGAATCGCCATGTAAACTGTTGGGGCAGTGGTAACGGATGTGAACTAAGGGAGACCTGCATCGGCAACAGCTGGTGGGACCACAACATGAACTGTCGCGGAGCCGTCTTCTGGATATATTCAACGGATAGCAGTCGCCATGGCAACCAATGTTCATCCAACACTCAAACCAACTGTCGCGGAAAACCCTTACAGCAAGGAGACGAAGTATATCTGCGGTACTCGATTAACGGCAACGTTGCGTGGTGGCTCAGTCATTACGGCGATGGAATCACTACTCAAACCTGTCCTGGTCTTGAAATCACAACGCACGAAAGTGATGGCTGCAGCTCAGAAGGCTGGACCATTTATCATAAATAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR039051 all species →	Family	SE-cephalotoxin-like	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR40472 all species →	RICIN B-TYPE LECTIN DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_073227960.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.