Gene detail

Detailed information of XP_073229059.1 in Porites lutea

Genomic Location: chr13:4782526...4815379
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140922912

ATGGTATTAAAACTTTTCTTGATCTCTCCAATACCTTTAGAAACCTTCAGACAATTTTTGGAGGACGAATTCGACGACAGAACCTATGCAAACAACATTATTCAAGGTCGAGCCATTAGCGATGCTCTTGCCAGGTTGGCAGATGGAATAAATTTGTTGGATAAGGAACTTCATAGTCAGGTTGTTGAACATCATGAAGATTTGTTACAGCAGGCAACTGGAATTGAAACACTTGAAGGTGTTCTTCAGATGATGCAAACCAGGATAAATTCCCTGAAAGCCTCTGTTGAAAGGATACAACAGCATATTGCTGAGCCATATTTCAAGATTGTATCAAGAACAGCCCAACTCCGAAGGCTTCAGGAAGCATGTGATATTTTAAGAAGAGTCATCAGAGTTATTTACCTTACCAAGCGACTACAGAGTCACTTGCAGGGAGGAGCCCGGGAGATCACCAAGGCAGCACAGAATCTCAGTGAACTGGATTACCTTGTTCAAGGAGCTGACCTTTCTGGAATTCAGGCTGTGGAAAATGACCTTAAGATCGCTGCCAAAGCAAGAAAAGATGTCGAAAACCAAGCTCAGAGGATGCTGGCCCAAGGAATGGAGACACAGAACCAAACCCAAGTAGGCACTGCTCTGCAAGTATTCTACAACCTGGGTTTACTAGTTAGCACAGTCAATGAAGTTGTCAGGAAAGTTAAAGAGAAGTTAGCAAGTTGTGTACAAGAAGCTTTGGATTCTAATACTCTCTCTCAGGCTGCCCACTCAAGCGCTGGTGGACCGGGCCGTGCCGCCATGCCTGCCCCTGGTAACACAGCGGCATGGCGAGCAACTTTGTGGACCAGAATGGAACAGCTTATGGACTCCATTTTCTCGGCATGTGGCCAGATTCATCATCTTCAAAAGGTGTTAGCAAAGAAAAGGGATCCTGTTACACATGTTTGCTTTATGGAAGAACTGGTGAAGGAGGGAAGTTCTTCTATTACTTCTTTCTGGGAGTCGGTGACACAAATCTTGACCCAGGAATTTGCACAGGCAGCCCAAGCCTCGACATTCTTGAAGCAAGCATTTGAGGGAGAATACCCCAAGCTACTGCGGTTATACAACGACCTATGGTCTCGCTTACAACAATTTAGCAATGCTTCAAACTCTACCTCCGTGTCTCTTGGGATACAATTAGAGCCTTCTTTTGGTCTTTTCCCAGCATCAGAGGACGACTTTAGCTTAAGTCCTGAACAAGCTCTGAAGAAAAGCCTTGCCCCATTTGAGACTGCCTACCTATCCAGGTCTCTGTCCAGATTATTTGATCCTATTAACCTCGTGTTCCCGTCTGGAGCGCGCAACCCACCGTCAAAGGAAGAACTGACCAGCATCGCAAAGACAATTGGCAGTGAGCTGAGCGTAGCCAGTGTAGATGCTGGTCTGACAATAACTGTGGCGAGAAACGTGGCGAAAACTGTCCAGCTCTACTCGGCCAAATGTGAACAACTGCTTGCTACCAGTGTGGAAGCGACTCAGTTATATGATCAAGCAAGTCCTGCGCAGCAGAAGAATGCTGCCATCGTGAACAGCTTGTTTCAACTGCATCAGGCCGTTACCAAGATAGTAGATGGGCTTAGGTCTCCCTCTGCAGTAGCCGTGGATGCCATAACTACTGGTTTACAGGGAATTGTAGCGCTCATCAACACAGCCTTAGATCCAATCCTAGAGGCAGTCAAACTGGATTTAGAAAATCTCATTTTCAAGATGCATTCGGAGGACTTTTCAAGTTCAACGCTATCACGTGACATAGCTGATAACCCGGATGCGCCTTGTTCCAGTTACATACAGGACATGCAGGATTTCATTATCCATGTGCAAAAGAACTATATTGCACTATATGAGTGTAGAGAGATGATGTTCGAAAGGTTGGAGGTGATTGTGTGTCGAATTGTCGAGTTGTTTGTTCGTCACGCCAGTTTACTGAGACCCATTGGAGAAGGGGGCAAGCTTAAGCTGGCGGCGGACATGGCACAGATTGAGTTCGCGGTAGGTCCGTTATGCCACAAAGTGTCTGATTTAGGAACGTCATACAAGCTTCTGAGATCATTTCGACCGCTGCTGTTTCAAACTTCAGAGGATATCGTAAATAACCCATCCATTGGTGAAAGTTTGCCCCACAGTGTAGTCTTACATTATTTATTTTCAAGAGCTCCAAACGAACTCAAGTATCCACATGAGGTAGCGGGTTGGTCATTAAGTTACTACTCTCAGTGGCTGGATGAACACTCATCAGAGGAAGAAAAACTCGCACTCATAAGAGGCACCTTAGAGGCATACGTCCAATCAGTACGATCACGAGGTGTAAAAGAATTCGCCGCTATTTATCCTATCATGCTTCGAATTCTCCAAGCTGCGAGCGGTTCAGTCAGTCTGTGA

Transcript

rna-XM_073372958.1

aatggacgccaacTTGGAAAAGCTTCTCCAAAATGATGGTAGTTTTCAAGACTTAAATTAAGATCGTCGGGCGTTTTCATGGTATTAAAACTTTTCTTGATCTCTCCAATACCTTTAGAAACCTTCAGACAATTTTTGGAGGACGAATTCGACGACAGAACCTATGCAAACAACATTATTCAAGGTCGAGCCATTAGCGATGCTCTTGCCAGGTTGGCAGATGGAATAAATTTGTTGGATAAGGAACTTCATAGTCAGGTTGTTGAACATCATGAAGATTTGTTACAGCAGGCAACTGGAATTGAAACACTTGAAGgtgttCTTCAGATGATGCAAACCAGGATAAATTCCCTGAAAGCCTCTGTTGAAAGGATACAACAGCATATTGCTGAGCCATATTTCAAGATTGTATCAAGAACAGCCCAACTCCGAAGGCTTCAGGAAGCATGTGATATTTTAAGAAGAGTCATCAGAGTTATTTACCTTACCAAGCGACTACAGAGTCACTTGCAGGGAGGAGCCCGGGAGATCACCAAGGCAGCACAGAATCTCAGTGAACTGGATTACCTTGTTCAAGGAGCTGACCTTTCTGGAATTCAGgctgtGGAAAATGACCTTAAGATCGCTGCCAAAGCAAGAAAAGATGTCGAAAACCAAGCTCAGAGGATGCTGGCCCAAGGAATGGAGACACAGaacCAAACCCAAGTAGGCACTGCTCTGCAAGTATTCTACAACCTGGGTTTACTAGTTAGCACAGTCAATGAAGTTGTCAGGAAAGTTAAAGAGAAGTTAGCAAGTTGTGTACAAGAAGCTTTGGATTCTAATACTCTCTCTCAGGCTGCCCACTCAAGCGCTGGTGGACCGGGCCGTGCCGCCATGCCTGCCCCTGGTAACACAGCGGCATGGCGAGCAACTTTGTGGACCAGAATGGAACAGCTTATGGACTCCATTTTCTCGGCATGTGGCCAGATTCATCATCTTCAAAAGGTGTTAGCAAAGAAAAGGGATCCTGTTACACATGTTTGCTTTATGGAAGAACTGGTGAAGGAGGGAAGTTCTTCTATTACTTCTTTCTGGGAGTCGGTGACACAAATCTTGACCCAGGAATttgcacaggcagcccaagCCTCGACATTCTTGAAGCAAGCATTTGAGGGAGAATACCCCAAGCTACTGCGGTTATACAACGACCTATGGTCTCGCTTACAACAATTTAGCAATGCTTCAAACTCTACCTCCGTGTCTCTTGGGATACAATTAGAGCCTTCTTTTGGTCTTTTCCCAGCATCAGAGGACGACTTTAGCTTAAGTCCTGAACAAGCTCTGAAGAAAAGCCTTGCCCCATTTGAGACTGCCTACCTATCCAGGTCTCTGTCCAGATTATTTGATCCTATTAACCTCGTGTTCCCGTCTGGAGCGCGCAACCCACCGTCAAAGGAAGAACTGACCAGCATCGCAAAGACAATTGGCAGTGAGCTGAGCGTAGCCAGTGTAGATGCTGGTCTGACAATAACTGTGGCGAGAAACGTGGCGAAAACTGTCCAGCTCTACTCGGCCAAATGTGAACAACTGCTTGCTACCAGTGTGGAAGCGACTCAGTTATATGATCAAGCAAGTCCTGCGCAGCAGAAGAATGCTGCCATCGTGAACAGCTTGTTTCAACTGCATCAGGCCGTTACCAAGATAGTAGATGGGCTTAGGTCTCCCTCTGCAGTAGCCGTGGATGCCATAACTACTGGTTTACAGGGAATTGTAGCGCTCATCAACACAGCCTTAGATCCAATCCTAGAGGCAGTCAAACTGGATTTAGAAAATCTcattttcaagatgcattcggAGGACTTTTCAAGTTCAACGCTATCACGTGACATAGCTGATAACCCGGATGCGCCTTGTTCCAGTTACATACAGGACATGCAGGATTTCATTATCCATGTGCAAAAGAACTATATTGCACTATATGAGTGTAGAGAGATGATGTTCGAAAGGTTGGAGGTGATTGTGTGTCGAATTGTCGAGTTGTTTGTTCGTCACGCCAGTTTACTGAGACCCATTGGAGAAGGGGGCAAGCTTAAGCTGGCGGCGGACATGGCACAGaTTGAGTTCGCGGTAGGTCCGTTATGCCACAAAGTGTCTGATTTAGGAACGTCATACAAGCTTCTGAGATCATTTCGACCGctgctgtttcaaacttcagaGGATATCGTAAATAACCCATCCATTGGTGAAAGTTTGCCCCACAGTGTAGTCTtacattatttattttcaagAGCTCCAAACGAACTCAAGTATCCACATGAGGTAGCGGGTTGGTCATTAAGTTACTACTCTCAGTGGCTGGATGAACACTCATCAGAGGAAGAAAAACTCGCACTCATAAGAGGCACCTTAGAGGCATACGTCCAATCAGTACGATCACGAGGTGTAAAAGAATTCGCCGCTATTTATCCTATCATGCTTCGAATTCTCCAAGCTGCGAGCGGTTCAGTCAGTCTGTGATTATCCATGGTGCCTCTATTCATTGTTGTGATAGTTTCAAGCGCGTTCCTTGTGGATAAATTCTAGCCGTGGTGGTGAAAAACGGAGTACCTCAAGATGCAGCGCACACTCCGATGTTAGAATCTGAAAAAGATAAGAGCTAAAAAAGTATTTATTATATCagacatttttttcttagatTTCAGAATGGCCAGAAATGCTTTATCCTAGTTGCGCTTTATTTTAGATAGTTTCATAGCAGAGGACTAATTTATCATTTAGCGACACAAATATGTTGTAAatattaagtaaaaaaatattcgcTCAAGAAGAGCTGAATAATTCGAGAATATGGATATCATATTAGGAGGAGGCAATTTAGCAGTTTGTTCAAAGCAATGGTTTTATCAAATTTGTGCTTTGGATGGTTTGAGCATTGTAGTCCATTTTGGCAGCTTTGTGACAAACGAATTATTCTCCCGTGCCTTTTTGTTCAAAGCAGGAGTTAACTCAAGCTAACTCAGAAATAGCACAGAAGATGATCGCTTACAAAGCAAATTTTTTGGGTGCGTTTTGGCTACAATTTCATGTTCAGACGCCTCTAAAATCATGAGTCAAAATgaacacaaaaaagaaacgaaacaacaaatacaacaaaagaaaacaatacttTAAGCAACAGAAACAAACATATTTCGATATTGCGTTCCACCACCTGGTTACCGTATTTATTgcaataagcgcccatcctagaggcagaaaaagttaataagcgcccagcctcgtaTGGTGGATGTGATTAAATAATAAGTTCGTACTACGTGTAGATAACTTGTAATTGTATGAAGCGTAATGATCGGGCTTCGAACAACTGTTCCCTGAACGTTATATTTGAAGCGGAGTTAGAAACATCGGAAAGaactaaggaaaaaaaatgttaacaatTTCGATCCATCATAATCATATTCTTTAATTAGCTGTTATTTTTAGCCTTTCGTTAacgttttaagcggttattttgtATTTCTCTCAATTTAAAGGCCCCGGGGTATCACGAAAGCTTGCCAAAtcgatatatatatttttttctggcaaataagGACTTTACATAAGTTTGATTTCAAttcattgttgttgttcaaGTTGAAAACCGGTTGGTTGTGGTTTTAAACATATAACATgataaagggaaataaagtGTATTTGACTCGTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20649 all species →	COG5_C	Conserved oligomeric Golgi complex subunit 5, C-terminal	Repeat	Interproscan
PF10392 all species →	COG5_N	Conserved oligomeric Golgi complex subunit 5, N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019465 all species →	Family	Conserved oligomeric Golgi complex subunit 5	Interproscan
IPR048485 all species →	Domain	Conserved oligomeric Golgi complex subunit 5, helical domain	Interproscan
IPR049176 all species →	Domain	Conserved oligomeric Golgi complex subunit 5, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13228 all species →	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0017119 all species →	Cellular Component	Golgi transport complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20292	COG5; conserved oligomeric Golgi complex subunit 5	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.