Gene detail

Detailed information of XP_073229565.1 in Porites lutea

Genomic Location: chr13:21372691...21396958
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140923373

ATGTGGCGGATTATTCTCTTCCTTTCGGTCACCTGTCTTACAACGCTGACAAATGGTCAACAGCAATCAGATCCGCCAAGGATTGTTGATTTTATGACTAGGGATCTACTTGCTCCTGGGGACGTCGAGTTTGATAAAGGAAATGCCTTAAAACTGCCATGTAGTGCTGTTGGAAATAACCTGCAGTGGACCTGGAAACACAATGACACAGTAATTTCAACCGGTGTTAATTTCATCATTGATGCTAATGGCACCTTGCATGGAAGTTGCCTTGAAAGTGCACATAGTGGACGTTATCAATGTTTTGTCAAGGACTCAGTTTCAGGTGTTGAGACATTCAGCAGGAAGATAATGGTTGCTGTAACAGTTGTAGGGGAATTTAACAATCAAAATACTACCGAGAAGCTTGTAGATCTTGGGGAGGAGTTTAGTTATTACTGCCCACAGCATTCCCCCAGTTTTGGCATCAGCTACTCATGGCAGGAGAAAGTCAGTAGAAGGAACATCCAGTTTAAGAGGAATGATCGAAGAGCCATCACACAGACAGGGCAACTACTAATCATGTATGTTACCCAGCAAGACCTTGATGAATTTGAAAAGTATGACAACAAAGGAATCAGATGTTTCATGACTGGAGCAAACATATTAGAAAATTCTGGTCTTTTAAAGTTAAAAAGGAGAAATCCAGGAAAAACAGATCCAGAGACACCAAGAGCGCCTGAGTGGAAGCTTATTCCTAATGACAACGAAACGGCTGTGGAGGGAAGAAATAAAACTTTGTATTGTCTTGCATTTGGAAGACCTGCGCCAAACATAACCTGGAAGATATTGAGGGGAGGAAAATGGGAGCAGATTGTAAATGAAAAGGACAATTTTAAGATTGCCGGTGCTTTCCATGGACGACTGCTTGAAATAAGTTTTGTAAATCAAAGCACTCAGACTTCGTACCGTTGTGAAGCGAGAAACTCCCGAAGTTTTGGGAACCCTTTAGTTCATGAAGTGGATCTCAGGGTGGAAGTTCCTCCGAGGTGGATGGCAGCTCCTCCGCAAGAAATTTCAATTGATGTTAATGGCACTGGCAGTTTAACATGCGATGCATTTGCAGACCCTTCGCCATCTTTTAATTGGTACAAGAATGGGAGTCAAATCACAACATGCACTGCGTATGTGATACTGAACGGCAACAAGTTGTATTTTAAAAATGTGCGGTACCCAGATGAAATCGGACTTTATCAGTGTGTGGCGGAGAATCCACATGGAATGATTGTGTCGTACACGTGGGTGAATGTTTCAGTAAAAGCACCATCTTTCGAGAGGGGATTTGGCCCATTCTACTTGTTTAATGGTACTGAAGGACGGCTGACGTGTAATCCAGAAGCAGCTCCACGGCCAAGTAAAGACCAATATAAATGGTATAAAGGAAACACTCTACTGAGGTCATCACCACCTTACAGAATAGAGCATGGGGAATTCAGCACATTGATAATTGACAAAGTTGACCAGAATCGAGACAAGGGACCATACACATGTTATGCAGAAAACGTCTTGGGTAACGCGACGGAAACAGCAAACGCTACAGTTCTTGAGAGGACAATAATTACGGTTCGTCCAGAAAACAAAGAAGTACAAGAGGGAACTCGTGTTAACCTGAGTTGCAAGGCCAAGGCTGACCCGTCTCTTAAGACAGAGTTGAGATACAAATGGAAAAAGAATAATTCCGACATAGAGTACAATAACAGAATTCAATGGCTTGAAGAAGCTAAGGTTCTGACAATTGCTAACATTACAGCTGAGGAAGCTGGTAATTATACTTGTGTGGCCTATACTCCTGATCCAAAAAGATCTGAAGACCAAGCATCTGCTGTTGTTAAAATCGTTAAAGCTCCCCCTCCACCTCCAATATACCAGACTCCTTGGTTCATCGCCTTAATGGTTATTATCGCTGTTCTGTTTATTGTGCTGCTGATATGTGGACTCTACACTCGACACGGCGCCGCTAAATATCCTGTTGAAAAACGGGAGAAACAACGTGGAGCTTTTATTGAAAAGGAACCGTTGGATGATGAAAAAGGTGCTGTCACCTCTGCAGGCCGAACGGAAAATCCGCCACTCTATCAGAGCCAGGGGTCACTACAGAGGAGCCCAGAAAGTGACCGCGACAGTTTGGACGATTATGGCGAGGGGCCTCAATTTAACGAAGATGGCTCCTTCATTGGAGAATATGGCGACGAGAAGAAGAATGCTCCGGACGAAAAGGATGACTCAGCTTTGGCGACATTCGTTTGA

Transcript

rna-XM_073373464.1

aacgaatttgaaaaagatgGCGGCCGAAATTCCGAGAAGTGTTCTGAAAATCCCACCTTTCATCGGCTCAGGTTAAATTCAAGGAGGAAGACCCATTCCTTGGTTTAAAAGACTAGTGGTTTTCACGCCAGTCAAAAGACGTAACGACTTTAGTGGATGCTGTTCCCATACATTTTGCGCAAACTTTGGTTTAATCTTCCATTGAAGTGCTCGAACGCTCGAACGTGCTTTTCCGTGCAGTAATGGCGATATTTAGGTTAATTTTTAGCAGGGAAAACCCATGCGACCTGTTAATCTGGTCTTTGATTTTAAGGGATATTGATTCCTCAAAATGTGGCGGATTATTCTCTTCCTTTCGGTCACCTGTCTTACAACGCTGACAAATGGTCAACAGCAATCAGATCCGCCAAGGATTGTTGATTTTATGACTAGGGATCTACTTGCTCCTGGGGACGTCGAGTTTGATAAAGGAAATGCCTTAAAACTGCCATGTAGTGCTGTTGGAAATAACCTGCAGTGGACCTGGAAACACAATGACACAGTAATTTCAACCGGTGTTAATTTCATCATTGATGCTAATGGCACCTTGCATGGAAGTTGCCTTGAAAGTGCACATAGTGGACGTTATCAATGTTTTGTCAAGGACTCAGTTTCAGGTGTTGAGACATTCAGCAGGAAGATAATGGTTGCTGTAACAGTTGTAGGGGAATTTAACAATCAAAATACTACCGAGAAGCTTGTAGATCTTGGGGAGGAGTTTAGTTATTACTGCCCACAGCATTCCCCCAGTTTTGGCATCAGCTACTCATGGCAGGAGAAAGTCAGTAGAAGGAACATCCAGTTTAAGAGGAATGATCGAAGAGCCATCACACAGACAGGGCAACTACTAATCATGTATGTTACCCAGCAAGACCTTGATGAATTTGAAAAGTATGACAACAAAGGAATCAGATGTTTCATGACTGGAGCAAACATATTAGAAAATTCTGgtcttttaaagttaaaaaggaGAAATCCAGGAAAAACAGATCCAGAGACACCAAGAGCGCCTGAGTGGAAGCTTATTCCTAATGACAACGAAACGGCTGTGGAgggaagaaataaaactttgtaTTGTCTTGCATTTGGAAGACCTGCGCCAAACATAACCTGGAAGATATTGAGGGGAGGAAAATGGGAGCAGATTGTAaatgaaaaggacaattttaaGATTGCCGGTGCTTTCCATGGACGACTGCTTGAAATAAGTTTTGTAAATCAAAGCACTCAGACTTCGTACCGTTGTGAAGCGAGAAACTCCCGAAGTTTTGGGAACCCTTTAGTTCATGAAGTGGATCTCAGGGTGGAAGTTCCTCCGAGGTGGATGGCAGCTCCTCCGCAAGAAATTTCAATTGATGTTAATGGCACTGGCAGTTTAACATGCGATGCATTTGCAGACCCTTCGCCATCTTTTAATTGGTACAAGAATGGGAGTCAAATCACAACATGCACTGCGTATGTGATACTGAACGGCAACAagttgtattttaaaaatgtgcGGTACCCAGATGAAATCGGACTTTATCAGTGTGTGGCGGAGAATCCACATGGAATGATTGTGTCGTACACGTGGGTGAATGTTTCAGTAAAAGCACCATCTTTCGAGAGGGGATTTGGCCCATTCTACTTGTTTAATGGTACTGAAGGACGGCTGACGTGTAATCCAGAAGCAGCTCCACGGCCAAGTAAAGACCAATATAAATGGTATAAAGGAAACACTCTACTGAGGTCATCACCACCTTACAGAATAGAGCATGGGGAATTCAGCACATTGATAATTGACAAAGTTGACCAGAATCGAGACAAGGGACCATACACATGTTATGCAGAAAACGTCTTGGGTAACGCGACGGAAACAGCAAACGCTACAGTTCTTGAGAGGACAATAATTACGGTTCGtccagaaaacaaagaagtacaaGAGGGAACTCGTGTTAACCTGAGTTGCAAGGCCAAGGCTGACCCGTCTCTTAAGACAGAGTTGAGATACAAATGGAAAAAGAATAATTCCGACATAGAGTACAATAACAGAATTCAATGGCTTGAAGAAGCTAAGGTTCTGACAATTGCTAACATTACAGCTGAGGAAGCTGGTAATTATACTTGTGTGGCCTATACTCCTGATCCAAAAAGATCTGAAGACCAAGCATCTGCTGTTGTTAAAATCGTTAAAGCTCCCCCTCCACCTCCAATATACCAGACTCCTTGGTTCATCGCCTTAATGGTTATTATCGCTGTTCTGTTTATTGTGCTGCTGATATGTGGACTCTACACTCGACACGGCGCCGCTAAATATCCTGTTGAAAAACGGGAGAAACAACGTGGAGCTTTTATTGAAAAGGAACCGTTGGATGATGAAAAAGGTGCTGTCACCTCTGCAGGCCGAACGGAAAATCCGCCACTCTATCAGAGCCAGGGGTCACTACAGAGGAGCCCAGAAAGTGACCGCGACAGTTTGGACGATTATGGCGAGGGGCCTCAATTTAACGAAGATGGCTCCTTCATTGGAGAATATGGCGACGAGAAGAAGAATGCTCCGGACGAAAAGGATGACTCAGCTTTGGCGACATTCGTTTGAGTGTTGCGTATCCTTAGCTCTTCGTGTGGAATACTGACCTGTAGTGACCCACGCATTGGGCTTTCACACGGTGAAGAATCCTGCATAACAGGAACCACgtattttttcgcgtttttcaggcgagcggAGGCAAGCGCGAAGCGAGGGAGGAGCGCGAGACAAGCGCGACCGGAGAAGGcgccaaaaatatatatatatttttgaaatatttttccgCGCCTTCCCTCGTCGCGTGTCTCTCTCTGCGCTCGCTTTGTGCTTCTCTTAACTAAGAAACGCGAAAAACTAGCCCCTTTGCTGCAGGCTAACGTTGACGTTTCTCATTAGATTCTTACTGGTATCTTGCTGAAATGTATTAAGAGTTTGCGAAGAGAAAGGACGATGGAAACAATAGCGAGTCGATAGTTGTGATGTTTTCTTGTTTCCAGTAACTTGCAGTTGCTTCTGTTGTCCCCGCAATCGCTCAGGAGTGAGGTTGTTTCAGAAAGATATCTCAGAGCTTTGAATTTCATCCGCAGACGCAAAGTTAAAACTAAGTAATAATTACACGTTTTCATCATGGACTCTTGGCAAAAAGGAGTTAGTGTTAACGCGTAGCTCACAAACGTTAAGAGCTGGTCGACAAATGCCGTATTTTATATTGCGCAACAATACCGTGATGCTTTCTGCTCGCGCTGGAGATGCTAAAACGAATTAGACCGTTTCCGCATTCCTGTGAACAATATACCGAGATAGCTTGAAGTtatctagtctgctacacagccttttttagtgtcgtcacgcaacgcttcttgTGAGGATGAGCGTttcgtgacgacactaaaagaCTTAAGCAATGGACCACACTTAGTATGGGTTTACTGCcttgataacccacgcgggatgttgggagaacacgagaaaagcttgtaaatcacgagccgaaggcgagtgatttaccaGCTTTTCGATTGTTCTCCCAAcgtcccaagtgggttatcaatctggtaaacccatagaaagtgtggtctattgcttttataaaataactgtttTCTATGAggttaccggcacaataaaccataggttttcaAACAaccagaacgcgcgtactatcttatttattttataatagAATTTAGCCTTCCCGTGCTTACTACGAAAACATGCGGGAAAGATTCTAGTTTGTCCTGAGAATAATGTCTCGGGTAGGGTTTTTAAGCTATTACACTGTGTAGCAAAGATTATGCTGCTATTAATTTTGACGCAGTCGCCATGCAATCGAGCTGTAAAACTGGTCGTTACTTTTGCTTAAATTTAAGGTGCTAGTTTCTTTTCGCCTCCTTACAGCACAATACTCCCTTTTGAATATACCGGTCGTCGACAGTGATTGACGCCATACCTCTACAGCGAGCAAAAAGCTGCATGCCTTGTTCTTGCAAAGAGCAagtattttaagttttattgtttttacaacGTTAAATTCTACGAATGCTTTTGAACTTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13895 all species →	Ig_2	Immunoglobulin domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13882 all species →	Bravo_FIGEY	Bravo-like intracellular region	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR026966 all species →	Domain	Neurofascin/L1/NrCAM, C-terminal domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10075 all species →	BASIGIN RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0070593 all species →	Biological Process	dendrite self-avoidance	Interproscan
GO:0098632 all species →	Molecular Function	cell-cell adhesion mediator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06756	NRCAM; neuronal cell adhesion molecule	-	Cell adhesion molecules	ko04514	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.