Gene detail

Detailed information of XP_073230364.1 in Porites lutea

Genomic Location: chr14:1005160...1020257
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140924234

ATGGCCTCTTCAGACCTTAGTCACGGAAATACGATTGTTATCGAAGAGGACGGCAAATTTCAACAGCAGATCGATCTTGCAGGAAACAGACTTGTTGTGGTGGACTTCACTGCTTCTTGGTGTGGTCCTTGCCGCATGATGACCCCCGTTTTTGCACGTCTGAGTGTAAAGTATTCTGCTGCTGTTTTTCTGAAAGTAGATGTTGATCAGTGTCAGGTGACAGCAATGCGTAATGGGATCCAATCCATGCCGACATTCTTCTTCTACAAAAACAGAAAGAAAGTGGATGAAATGACAGGTGCAAATCCCACTGGCTTAGAAGATAAAATCAATCAGTGGATTGGTGGTGCTGTGGAAACTGTGAGTGTGGATCCCAAAAGAGTTGCAGTGGGACGTGGGTGGGACTGTTTTGAGCAGCTTCTAGACAATCCTACAGAAGTTTTTATGGACGCATCAGGTCTTCTCCTCAAGTTTGCTTCTAATATTATCAACAATCCAGACAACCCTAAGTATCGATCAATACGAGTAGGCAACAAAATCTTCCAGTCCCGACTTCTGCCGGTGAATGGGGCAGTTGAATGTCTCTTTGCTATAGGATTTCAAGAGCGTGGTGACCAACTGGTCTGTCCACCTGGAGAATCATTAGAGAACATGTTGATACTCCAAGATACATTAAATGATGAAAGAAGCCATCACAGTGACTCTCAAGTATCTAGCCCATCACCACAGGGTACCAAGTCTTCGGGATGTTCACCACCTAATATGGGATGTGCACAGCCTTCCATTATTCCTAGTCCAGCCGCAAGTTCCTCGGACAATGAAAGGGACTTCCTTCTTAGACTACAAAGCTCACTGCAGCATGTGCTTCTGTATGAAGACCCAGAATTACAACAGCGGACACGTGAATTTATCCCTCTAGCTGAGTTGAGGAAAAGAGCAAAGGAGGCCAGCGATAGAACAAAAGAGGGAGGAGGGAGTGGCGTGGATGAGCGGGATTGCCTTATTTTAGAACTTCTGTCTTGGTTTAAAGCTGAATTTTTCAAGTGGGTGGACAAGCCATCTTGCCCGTCCTGTGGTTCTCTGACATTTCCTATTGGCGTTATTCCACCGACACCCGAGGAGGCCAGGTGGGGTGCTGGAAATGTGGAAAGTTATAAATGTCAAAACTGCATGAGGACAATAAGGTTTCCACGATATAATCATCCTGCTAAACTGTTAGAAACCCGCAAAGGAAGGTGCGGTGAATGGGCTAACTGTTTCACACTTTGCTGCCGAGCTGTTGGGTTTGAGTCACGTCACGTGTTAGACTGGACTGATCACGTGTGGACTGAAGTGTACTCTGAGGCGCAGAAGAGATGGCTTCATTGTGATTCTTGTGAGAACACGTGCGATAAACCACTTCTTTATGAGGCTGGCTGGGGGAAGAAACTTTCTTACATCGTAGCATTTTCACATGAACAGGTGCTGGATGTGACGTGGCGTTACTCTGCTAAACACGATGAAGTGCGCAAGGCAAGAACACTCGTGTCAGAAAAATGGTTAAGTGAAACAATTTCCAATCTAACAGAAGAGCGTCAAAGAAACTTGAGTGAAGAACGGAAGAAGGTCTTAATGGAACGCCAAGTAAAGGAAATTGTAGAGTTTTTTACCATCAAATCTGTCCGCGATGGTGAGCTTCAGGGGAGAGTCTCGGGTGATTTGGCCTGGAGGCTGCTTCGAGGAGAAACAAAAGTACAAGAAGATGAATATAAGCACGAACCTTACATTTACAAACCTACTGACGAGGAAATCAAGGAAAAAAGATTGCGATTTTGCTACAACTGTGTTATAAACAAGTATCTTAGAGGCTTTGATAGAAAGTTAGACATATCCGACTGGCAATCAAGAGTTGCTTCATATAGCTCTATGATGCGTAAAGTTGAGCGCGATTGGAAAATGACATATTTATCGAGGACAGAATCTGCTTCAACAGGCTCAATAACATGGCAGGTAGATTTAAGTTCTTGCAATTTAGTGATTGACAGCGTTACCATAGTAGCAACAAGCACCACGTTTCAGACAGGTAGAGTGGACTGGGTGCTAAGTGGAGATGACGAGAGCCAACGGGAGAAACTTTCTGGGGGACAAGAATCAACCATTTCCTCAGCTCTGAGTGGCTCCAAGACCCTCAAACTCACAGCTACCATCAGTGGCGGGAAAGGAGACGTTGCCTGGCAACACGCGCAGCTGTTTCGTCAGACCTTTGCTAGCCAGAGTGAATACCCACTTGACATTGCGGTCTTTTTTCGAGAGTCTGATCGTGACACTCATCTTTAG

Transcript

rna-XM_073374263.1

TGTATCCGGTGAGAGCTGCGAGAAGGCAAAGGGGTCGCATTCGCTCCAGCGTTGAGTGTTGTGTAGTAACTGCATAAAAGGCTCAACCTGAAAACTCGCATTGGTATCCAGATCATTTAATTACTGTTGATTGATAAAGTTTATATTCTGCGGTTGAAAGACTGTATGTTTTGATACATCTCGGTCCCTGATCCAACATGGCCTCTTCAGACCTTAGTCACGGAAATACGATTGTTATCGAAGAGGACGGCAAATTTCAACAGCAGATCGATCTTGCAGGAAACAGACTTGTTGTGGTGGACTTCACTGCTTCTTGGTGTGGTCCTTGCCGCATGATGACCCCCGTTTTTGCACGTCTGAGTGTAAAGTATTCTGCTGCTGTTTTTCTGAAAGTAGATGTTGATCAGTGTCAGGTGACAGCAATGCGTAATGGGATCCAATCCATGCCGACATTCTTCTTctacaaaaacagaaagaaagtgGATGAAATGACAGGTGCAAATCCCACTGGCTTAGAAGATAAAATCAATCAGTGGATTGGTGGTGCTGTGGAAACTGTGAGTGTGGATCCCAAAAGAGTTGCAGTGGGACGTGGGTGGGACTGTTTTGAGCAGCTTCTAGACAATCCTACAGAAGTTTTTATGGACGCATCAGGTCTTCTCCTCAAGTTTGCTTCTAATATTATCAACAATCCAGACAACCCTAAGTATCGATCAATACGAGTAGGCAACAAAATCTTCCAGTCCCGACTTCTGCCGGTGAATGGGGCAGTTGAATGTCTCTTTGCTATAGGATTTCAAGAGCGTGGTGACCAACTGGTCTGTCCACCTGGAGAATCATTAGAGAACATGTTGATACTCCAAGATACATTAAATGATGAAAGAAGCCATCACAGTGACTCTCAAGTATCTAGCCCATCACCACAGGGTACCAAGTCTTCGGGATGTTCACCACCTAATATGGGATGTGCACAGCCTTCCATTATTCCTAGTCCAGCCGCAAGTTCCTCGGACAATGAAAGGGACTTCCTTCTTAGACTACAAAGCTCACTGCAGCATGTGCTTCTGTATGAAGACCCAGAATTACAACAGCGGACACGTGAATTTATCCCTCTAGCTGAGTTGAGGAAAAGAGCAAAGGAGGCCAGCGATAGAACAAAAGAGGGAGGAGGGAGTGGCGTGGATGAGCGGGATTGCCTTATTTTAGAACTTCTGTCTTGGTTTAAAGCTGAATTTTTCAAGTGGGTGGACAAGCCATCTTGCCCGTCCTGTGGTTCTCTGACATTTCCTATTGGCGTTATTCCACCGACACCCGAGGAGGCCAGGTGGGGTGCTGGAAATGTGGAAAGTTATAAATGTCAAAACTGCATGAGGACAATAAGGTTTCCACGATATAATCATCCTGCTAAACTGTTAGAAACCCGCAAAGGAAGGTGCGGTGAATGGGCTAACTGTTTCACACTTTGCTGCCGAGCTGTTGGGTTTGAGTCACGTCACGTGTTAGACTGGACTGATCACGTGTGGACTGAAGTGTACTCTGAGGCGCAGAAGAGATGGCTTCATTGTGATTCTTGTGAGAACACGTGCGATAAACCACTTCTTTATGAGGCTGGCTGGGGGAAGAAACTTTCTTACATCGTAGCATTTTCACATGAACAGGTGCTGGATGTGACGTGGCGTTACTCTGCTAAACACGATGAAGTGCGCAAGGCAAGAACACTCGTGTCAGAAAAATGGTTAAGTGAAACAATTTCCAATCTAACAGAAGAGCGTCAAAGAAACTTGAGTGAAGAACGGAAGAAGGTCTTAATGGAACGCCAAGTAAAGGAAATTGTAGAGTTTTTTACCATCAAATCTGTCCGCGATGGTGAGCTTCAGGGGAGAGTCTCGGGTGATTTGGCCTGGAGGCTGCTTCGAGGAGAAACAAAAGTACAAGAAGATGAATATAAGCACGAACCTTACATTTACAAACCTACTGACGAGGAAATCAAGGAAAAAAGATTGCGATTTTGCTACAACTGTGTTATAAACAAGTATCTTAGAGGCTTTGATAGAAAGTTAGACATATCCGACTGGCAATCAAGAGTTGCTTCATATAGCTCTATGATGCGTAAAGTTGAGCGCGATTGGAAAATGACATATTTATCGAGGACAGAATCTGCTTCAACAGGCTCAATAACATGGCAGGTAGATTTAAGTTCTTGCAATTTAGTGATTGACAGCGTTACCATAGTAGCAACAAGCACCACGTTTCAGACAGGTAGAGTGGACTGGGTGCTAAGTGGAGATGACGAGAGCCAACGGGAGAAACTTTCTGGGGGACAAGAATCAACCATTTCCTCAGCTCTGAGTGGCTCCAAGACCCTCAAACTCACAGCTACCATCAGTGGCGGGAAAGGAGACGTTGCCTGGCAACACGCGCAGCTGTTTCGTCAGACCTTTGCTAGCCAGAGTGAATACCCACTTGACATTGCGGTCTTTTTTCGAGAGTCTGATCGTGACACTCATCTTTAGTTTGCGTGACACACAGAGAATTTATTAACCACATGTTCCGTCTTTAGGTTACGTTACATAGAACATCTAGCAATGTTAACAATAACAACCCTTcctttgtgtcgtcacgcaacgctctgggatggagcgttgcgtgacgacacaaagaacgaTCGTGTAGCAGAGTAGTGGGTCCCAAGTTGCCAAAATTGTGCATGCAATTGTGCAGACGGACACCGTGAGACCGGAACTACGTGGCCGTCTTTGAGAGTTGTCTTCTCAATAGAGGGTAAATTGAGAATGGCAAGGACTAACTCTTCCGGTGGGGGACTGCCATACGAAAAAGAGGGGGATACCCGTCGGAAAATTAGAATTGAACTCTTAAAAATGTGGCTTTATTCGAACCCTGAAGGTTACTACACCAACACAGTATGACgacattctttgtttgtttattaattatattatttataGAGATTTCTTAACGTGCATCCCCAAGCGATACCTtaataggtaaaaaaaaaattgttttccgtcctggggcctgtttctcgaaagtcccggtaacttttcggggcCGTAAAgttgttttatgtttgccgtTTTGGCATTCAAgctcaaagtttcaataattttgaaaatgaaacaacaaGACTATCAGGTAACGCAGCAAAATTGACGGGTTTGTGAGTTAGGAACTATGCTATActtttcaacaggttttgacttgaaaatttgccttcgggcccgaaaagttatcgtCTCTTTCAAGAAACAGGCCCTTCAGCACTTTAAGCGTGACCAAACTATCTAATATTTCAATTGTTGACCCTTGCGCGAGGCGAGACGAAAAACGTCCCCGTCATATTCGTATGGGAGTCCTCCCACGGGTAACTCGTGGTGTCCGTTTAAGGGTGCGTTCGACTGATCATATTCCAGAATaagaatacagtcgactcccgataactcgaaccctagccaactcgaacctcgcgcttaCTCggaccaaaatcgatttctttTTGATTTCCCTCATACAttgactgtaattttaccctctgGAGCTCAAACCATGGTTTAACGCGTTAcaatgcgaaaaaaaaaacgaagtgAACCGCTGTCGAAAACATTGAATTTCTCTCAAAACAATCGtgtattctttctttttaagcttCTTTACTTTTCTCGAACTCTGTTTTCCGTTACTATATAAAACAAAACGTGGACAGTAATAAGTGCCTCGAGGGTGTGTGCCTTGTATTCCACTGTATTTGCTCTGTATAGAATAAAGGAAAAGTCGAAATAAAGATTGCTTAAGGCCACCTAGGAAATAAATATTGTAGAAATTAGCCAAGTCAGGAAAGCTAATATAGTATTAGAGGAACGTTATGTGGCTTTAAACTTATTGACAAAGTGAAAGGTATTAAGTAATTGAAGGGACCGGGTGATAGTTGTTAAGGCTTTCTTCTTGTAGAACGAACCGAAAGGAAAGAGTAGTAAAGACTAACAGCAACTAAGAGAATataaaaatcagtaaaaattt

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002168 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan
PF04721 all species →	PAW	PNGase C-terminal domain, mannose-binding module PAW	Domain	Interproscan
PF01841 all species →	Transglut_core	Transglutaminase-like superfamily	Family	Interproscan
PF09409 all species →	PUB	PUB domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006588 all species →	Domain	Peptide N glycanase, PAW domain	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR002931 all species →	Domain	Transglutaminase-like	Interproscan
IPR036339 all species →	Homologous_superfamily	PUB-like domain superfamily	Interproscan
IPR050883 all species →	Family	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase	Interproscan
IPR018997 all species →	Domain	PUB domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR038680 all species →	Homologous_superfamily	PAW domain superfamily	Interproscan
IPR017937 all species →	Conserved_site	Thioredoxin, conserved site	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12143 all species →	PEPTIDE N-GLYCANASE PNGASE -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006516 all species →	Biological Process	glycoprotein catabolic process	Interproscan
GO:0000224 all species →	Molecular Function	peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006515 all species →	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0006517 all species →	Biological Process	protein deglycosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01456	E3.5.1.52, NGLY1, PNG1; peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase	EC:3.5.1.52	Protein processing in endoplasmic reticulum	ko04141	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites lutea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites lutea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →