Gene detail

Detailed information of XP_073230735.1 in Porites lutea

Genomic Location: chr14:11555921...11568269
NR annotation: no NCBI-NR hit recorded
Species abbreviation PLUTE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073374634.1

gtttccaatatggcggcagTGTTGAACATGAACATGATCAACTGTTTTAAGTGAAAATTATGGCGACTGTGTGGAGAAAGCTACTTTTCAACAAACCAGGAGTACGTTTAGACCTCACCTTACAAAGTGGACAGTCATTCAGATGGAAAGAAACAGCACCTGGCGAGTGGACCAGTGTTATCTGCGGCTTCGTTTGGATTCTAAAACAGTTAGAACAAGGTGAAATTTTGTACCGTGTTTATAAGTCGTCAAATGGACCACACTCATCACGCGGAAAACGGGTCTTAGAAGAAGTTCAGATCTCTTCGGAAAGTGAAAAGGATAAGGGATCGAAAATTTACGAGTCTATTTTGAGAGATTACTTTCAAGTGGACGACGTAGATGTAGAGATCCTTTTTGACCAGTGGAAAACAAGTGACCCACACTTTGCTAAAGTTTCAGACGAATTCCGAGGCGTCAGAGTTCTACGACAAGATCCAGtggaaaatttattttctttcatttgctcATCAAACAACAATATCCCACGGATAAGTGGAATGGTTGAAAAACTGTGCCAGGCATATGGCCAGAAATTGGGAGAATTGCATGGAGTGACATATTTCACTTTTCCTTGTTTAAAAGATTTGACCGGTgcaaaagttgaagaaaatttacGGAAGATGGGCTTTGGATATCGAGCAAAGTTTATTAGTCAAAGTGCTTGTTTTATTCTTAAACATCATGACAGTGGCTGGTTGGAAAAATTAAGAAGTGTCTCTTATGAAGAGGCCCATGCAGcTCTTTGTGAGCTGCCAGGTGTTGGAGCTAAGGTCGCTGACTGTGTGTGCCTAATGTCACTTGACAAGACTGAAGCAGTGCCGGTAGACACACATGTCTGGCAACTGACTACTAAACATTACATGCCACATCTACAGAAAACCAAGTCACTCACTACAAAGATGTATAAAGAAATAGGGGATCACTATCGTTTTCTGTTTGGAAAGTATGCAGGATGGGCACAGTCgGTTCTCTTTACATCtcatttaaagaaatttgaaactgAAAACCTTGACATAAAACGAAAGAAGCAGTCTAAATCTAATAAGAGAAGTGTGGAAACAGAATCCAGTTCAATGAGCAGCCCTCAGCCGTCAACAGCAAAGAAACGAAAATGTAAATAGGGAAAGACAACAAGGCACACATGTTAAATTTTAGTTTGTCTTAAAATGTTCCTTGTGGGCAGCATTAATAATGTGGTAATACTGTGCTACATAACATGTCCCACCCTCGTccgaaaaaaagtgaaatcttTGATGTCTGCGTCATGGTTCTTTGCGGCAATCACGCTACCTTAGCTATTGGTGTTTGCCTTTCATTTTGTATTATTACGGCCTTTAGGGGAGCAagagtggcgcagtggtgagagcattcgccttccaccaatgtggccttGGTTCGAACCCCAGCGTCGGCGCCATATGTGggtattatttgtttttgttgattcTCTCCCTtactccgagaggtttttctccaggtactccagttttcctcTCTCttaaaaaaccaacacttccagaTTCGATTCTATCTGGAACGCTCGTACACGTTTCAGCAAGTTCTTGAGAACTCGTAAGTGCTCCTTGggcaatctcgttcccagacgCTGCGATCCTTGTGGTCAGAACCAAGGATCACCAAGAAGAATCCGAAAAATCTGTGATTGCAAATAACTTTGCAAGTGAAAAAAACTTTGAGCGTGAAACAGATCATTTGTGTACACACCAATCTTATATGACTTAAAACCGTTAAGAAAAAAGTTTATCTCGATAAGTCACGAAACCACGCTACAttgttattttgttcaaaaatttgccTTATTTTTGAAAGTCATTTTAATGCCATTCTTCAAGAGAATTACTCGGCATACATGTTACTGAACTTTTCAAATTTGCATACAGCTGTGCTCATTCTGAGTACAAAAGAATGTGTGTCGTCATAACTAAGTTTTAGTCGcggtatttaatttttttctttttcggtcTCCTTGAACAGTCCTTTCGAGTTACTTTCTTCAGTAAATACACCGGTCGAGATCATGTGAAGAAAAGGACTGCTTCGAAGGAGTAAATTTCAACAATGTGCGAGAAAGGCAAAATTCCCTCGGAAACTTCTCTTGGTCAAATGGGTAGACAACTTCACGCAGGCGGAATTAAACCGGAACCAGGATTTTGTAGTTCCGGTTTTGGATTTTTCCAGAGCGTCCGTTTCCCGGTCCCCTGGATTAGGGtatgggtaaacaaattacaaattacaatcatggttaaaacaaattaaagcaatTGTATCATTTTATTTGAATCCTTGCCTTGCCGATCACCGGTGTCCCGCCAAcgtcgttcccaggttctctctcgcTCCatagaaccctgggaacgaggttggtgtCCCGCATGTGTTTGGCCCGGGTCTATCAAGAGAAGACTTTTAAAGAAAGTTCTCGACAACCTGGGGCCAAGACATGAAGGCTATGGGGTCGCAATGATGATGTCCCAAACTTATTAAACTAGCTCGGAAACCAATAGGAAAGTtacatttttattgtatttatttattatttatttgtttacctatttatttatttgttatataTTCGCtactagaaaaaaaagaattgtggCCGGGGAGACCTAAAAAACTAGAAAGCTTATGAGAAAGAAGGCCTCCTCGAACAAAACAAGTGAAACATAGCCGACAGTATAAAATACCGTaatattccgaaaataagcccctccaaatataagcccggCCCCCCCAAAGCgttaacgcaaaaaaaaaccctccgttaaaccgcctctccaaatataagt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00730 all species →	HhH-GPD	HhH-GPD superfamily base excision DNA repair protein	Domain	Interproscan
PF07934 all species →	OGG_N	8-oxoguanine DNA glycosylase, N-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003265 all species →	Domain	HhH-GPD domain	Interproscan
IPR012904 all species →	Domain	8-oxoguanine DNA glycosylase, N-terminal	Interproscan
IPR052054 all species →	Family	Oxidative DNA damage repair enzyme	Interproscan
IPR023170 all species →	Homologous_superfamily	Helix-hairpin-helix, base-excision DNA repair, C-terminal	Interproscan
IPR011257 all species →	Homologous_superfamily	DNA glycosylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10242 all species →	8-OXOGUANINE DNA GLYCOSYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0008534 all species →	Molecular Function	oxidized purine nucleobase lesion DNA N-glycosylase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006285 all species →	Biological Process	base-excision repair, AP site formation	Interproscan
GO:0034039 all species →	Molecular Function	8-oxo-7,8-dihydroguanine DNA N-glycosylase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03660	OGG1; N-glycosylase/DNA lyase	EC:3.2.2.- EC:4.2.99.18	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.