Gene detail

Detailed information of XP_073231395.1 in Porites lutea

Genomic Location: chr14:22380560...22400629
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140925296

ATGGGGAGCTCAACGTCGAAATTTCGTAAAGCGCTACAGCGCGGAGAAGGAGTTGAGGCCATGCACATTTATCTGAAAAACCCAGACATAAAACGTAATCTAGACCCCAACCACAGTTTTGGCGTGAATCACGGCCATAATACAGCACTACATTACGCTGCTTTGCACGGTATGAAAGCTTTTGTGCGAGAATTCCTAGAGGAGCGCGCAAACCCGAACATTCGAAATGCCTTGGGCCAAAATTCTCTACACTGTATTTGTTCCGTGACGCACATGTACCAGGTGAACGAGTCATCTCTTGACAAGACCAGGGCTGAGTGTTTGTCTAATCTTTTAGCTTGGAATTCAAGCAACCAAGAGGAAATAGCCGCCGAGATAGATGTAAAAGATGAGGCTGGTAACACACCCTTGCATTATGCTGCTAGATCAGGTCTTTTTCACTGTGTTCAGATCTTGGTTGCCTCTGGTGCCTCCTTGTATGAAGAAAATAAAAATGGAGAGACTGCTTGTGACTGTGCAATAAAAGGGAACTTTAATGATATTGCATCTTTCCTGGAGTCGAGAATGGTTTTCTCTGAGAGTCCGAGTGCCATTGCTGTTGAGGAACCTATATTTATTAACACAGATGACCAGAAACAGTATCGAGGCCTGTGTGCTCAAGATCTACAAGAAGCTAAGGACTTGATGCTTGTGGAGACTGCCGATATGCTCAGGGTGCCATTATTCACTGCAGAGGGTCTGCTGCGGAACCATGACTGGTCCAAGGAGGCTCTGATTGAAGCATGGATGACTGATCCTGTTGCTGCTTGTGAAAAAGCTGGCGTTACTCTTCCAGAGAATCATCATACAGGCAATGCTGAACTTGAAGAGAAAGCAAAACTTGCCAGAAAAAGTAACTTTAGAAGTTCTGAGGTTTGTTCTATCTGTGTGGAAGAAATAGTCTATGAAGATGTTCCACTATCTCTTTCTTGTGGTCATGAATTCTGCCGCTCCTGTTGGGAGAGATACTTAAATGAGAAGATTAAAGATGGAAAAGCACATGGTATTCAGTGTCCTGCATTTGATTGTAGTGCTTTAGTGCCTGTGGAAACTATTGAAAGCCTTGTCTCAAGAGAAATGGCAAAGAGATACCTTCATTTTGATATAAAGGAATTTGTTGAGAGTAATCCCAGTTTGAAATGGTGTCCATTTCCTCGGTGTGGCCGAGCTGTGCGTCTCCCACTTAGCATGCTACCCTCATCACCTGTTGCTCGGGAAGTGAGCTCATCAGAAGAAACAGAACCCATGATTGTAGACTGCGGTCAAGGTCATTTTTTCTGCTGGCACTGTGCACAGGAAGCCCATGCTCCTTGTAGCTGTGAACTGTGGCGTAGATGGCTGAAGAAAATTGCAGAGATGATGCCAAAGATACCAACCACAAAAGATGTTTCTGAGTGTCCTGAAACAGAAGTTGTTGCAAACACCTTATGGCTAGTAACAAACTCTAAATGCTGCCCTAACTGCAAATCGCCCATTCAGAAGAATGAAGGATGTAATCATATGAAGTGTACAAAATGTAAACATGAGTTTTGCTGGGTTTGCCTTGAACAGTGGAAGAAACACAGTTCAGCTACAGGAGGTTATTTTAGGTGTAATAGATTTGAAGTAGTGCAAAAAGTAGAAACAGAATCAGCTAAGCTAGTGTCAGAGGCAAGTGCAAAGAATGCCCAAATAGTAGAGTTGAATTGTTTCCTACATTACTACTCTCGCTTCAAGAATCACGAAAATAGTTACAAGTTTGAAGAGCCTTTATTGGGTACAGCTAAAGATAAAATGACAGCTCTGGCGATGGCTGCCATAGAAACAGCATCAGCAGATAATGTTGATACGTCTTTCATCGAGGATGCTGTGCATGAATTACTTAATGCAAGACGAGTTTTACGAGCATCATATCCTTATGGTTATTATCTTACCGGCAATAAAGACAAGAAAGCAATATTTGAGTCCATGCAGACTGAAGTAGAAGAAGCTACTGAGACTTTGTCTCAGATGGTGGCTCGACCTTATTTGAGAACTCCGCGCGCAAAGATAATTCAAACAACCCAGCTACTGCATAGAAAGCGACAGGACTTTTTGTTGGCTTTGTCTCGAGGAGTTATTCCTGATGACGATCAGCTTTCAGAACCCACAGGCTTTGTTGATAGGCTAAGTCTAATTTCACATTCAGGTGCTAGTCAAGACAGTGAGTCTGATGAAGATGAGAGCAACCTTGATGAAGTGCTTTACTCAATTGAACAGTCAATTCTCAGTTCACGTTTAGCGAAATTGGGTATAAAACAGAGCGGTGATAGGGCAGAAGGAGAACAAGCCACGCCCCTTGAAGATAGAGTCAACTGCGAAACTATTCACAAAAAATTCAACATGACTTCCTGTTACTTATGTAAACATGGCTACAGCTCCAACAAGAAAGAAGAGAAAAAGAAAAAACGTCACCGCCAAAGCCAGCCAGCTGAGTTTGATGAGGAAATTGATGTAGACTTTATGAGGGCCATTCATCTTTCCCTGCTACAACACAGCACCCCAGCCAATCACAGAAGCCGAGAATCAAGCTCTTCTAGTAGCTCAGCAAGCTCAAACAGAGATCAGACACAGCCTAGGCAAGACATGGCCGCCGCCATGACAGTGTTCTCTACTGAGGATAGTGCCTCTCTACAAAGAGCCATAGAGTTATCACTTCAAGATTCTGCTGTAGGAGATATATCCTCGTCTCCTGATGACGATATCAAAAGAGCCATCAGACTCTCACTGCAGGACAGCGGTCTGCCCCCAGCGGGTAGTGATAGCAGTGGAAACACGGACAGGTCATCTTCTCAAAACCAGCGACCAACACTTCCAGCAGATAGTGAGAGTGATAGTGATGATGAATTCGTTGTTTAG

Transcript

rna-XM_073375294.1

CAAAGGCCTTATTAGAGTTCTTGTTATTTTCCCTTTCTAGTTTGATGTGGAGTCTAGTGACGTCGTTCGCTAGCAATAATATATCGAGACAGGCAAGGTGATACTTAACTATCAGCAGGAGTGGAAAAGCATGGATAGTTTTAGTGGACAGGCGAAGGGCACCAATGGATGACTTCACGCTCATTAACTGATATATTTCGGGTTCTCCTGGCCGGCCCGCCACATGTTTCAAAGGAACTACCACGGACTGTGGATACCCTAAACGTTTctcttcattttttgttttgttttttaccgCGGCGAACTCGAAGTCGCCGGTTTTGCCAATGGGGAGCTCAACGTCGAAATTTCGTAAAGCGCTACAGCGCGGAGAAGGAGTTGAGGCCATGCACATTTATCTGAAAAACCCAGACATAAAACGTAATCTAGACCCCAACCACAGTTTTGGCGTGAATCACGGCCATAATACAGCACTACATTACGCTGCTTTGCACGGTATGAAAGCTTTTGTGCGAGAATTCCTAGAGGAGCGCGCAAACCCGAACATTCGAAATGCCTTGGGCCAAAATTCTCTACACTGTATTTGTTCCGTGACGCACATGTACCAGGTGAACGAGTCATCTCTTGACAAGACCAGGGCTGAGTGTTTGTCTAATCTTTTAGCTTGGAATTCAAGCAACCAAGAGGAAATAGCCGCCGAGATAGATGTAAAAGATGAGGCTGGTAACACACCCTTGCATTATGCTGCTAGATCAGGTCTTTTTCACTGTGTTCAGatctTGGTTGCCTCTGGTGCCTCCTTgtatgaagaaaataaaaatggagAGACTGCTTGTGACTGTGCAATAAAAGGGAACTTTAATGATATTGCATCTTTCCTGGAGTCGAGAATGGTTTTCTCTGAGAGTCCGAGTGCCATTGCTGTTGAGGAACCTATATTTATTAACACAGATGACCAGAAACAGTATCGAGGCCTGTGTGCTCAAGATCTACAAGAAGCTAAGGACTTGATGCTTGTGGAGACTGCCGATATGCTCAGGGTGCCATTATTCACTGCAGAGGGTCTGCTGCGGAACCATGACTGGTCCAAGGAGGCTCTGATTGAAGCATGGATGACTGATCCTGTTGCTGCTTGTGAAAAAGCTGGCGTTACTCTTCCAGAGAATCATCATACAGGCAATGCTGAACTTGAAGAGAAAGCAAAACTTGCCAGAAAAAGTAACTTTAGAAGTTCTGAGGTTTGTTCTATCTGTGTGGAAGAAATAGTCTATGAAGATGTTCCACTATCTCTTTCTTGTGGTCATGAATTCTGCCGCTCCTGTTGGGAGAGATACTTAAATGAGAAGATTAAAGATGGAAAAGCACATGGTATTCAGTGTCCTGCATTTGATTGTAGTGCTTTAGTGCCTGTGGAAACTATTGAAAGCCTTGTCTCAAGAGAAATGGCAAAGAGATACCTTCATTTTGATATAAAGGAATTTGTTGAGAGTAATCCCAGTTTGAAATGGTGTCCATTTCCTCGGTGTGGCCGAGCTGTGCGTCTCCCACTTAGCATGCTACCCTCATCACCTGTTGCTCGGGAAGTGAGCTCATCAGAAGAAACAGAACCCATGATTGTAGACTGCGGTCAAGGTCATTTTTTCTGCTGGCACTGTGCACAGGAAGCCCATGCTCCTTGTAGCTGTGAACTGTGGCGTAGATGGCTGAAGAAAATTGCAGAGATGATGCCAAAGATACCAACCACAAAAGATGTTTCTGAGTGTCCTGAAACAGAAGTTGTTGCAAACACCTTATGGCTAGTAACAAACTCTAAATGCTGCCCTAACTGCAAATCGCCCATTCAGAAGAATGAAGGATGTAATCATATGAAGTGTACAAAATGTAAACATGAGTTTTGCTGGGTTTGCCTTGAACAGTGGAAGAAACACAGTTCAGCTACAGGAGGTTATTTTAGGTGTAATAGATTTGAAGTAGTGCAAAAAGTAGAAACAGAATCAGCTAAGCTAGTGTCAGagGCAAGTGCAAAGAATGCCCAAATAGTAGAGTTGAATTGTTTCCTACATTACTACTCTCGCTTCAAGAATCACGAAAATAGTTACAAGTTTGAAGAGCCTTTATTGGGTACAGCTAAAGATAAAATGACAGCTCTGGCGATGGCTGCCATAGAAACAGCATCAGCAGATAATGTTGATACGTCTTTCATCGAGGATGCTGTGCATGAATTACTTAATGCAAGACGAGTTTTACGAGCATCATATCCTTATGGTTATTATCTTACCGGCAATAAAGACAAGAAAGCAATATTTGAGTCCATGCAGACTGAAGTAGAAGAAGCTACTGAGACTTTGTCTCAGATGGTGGCTCGACCTTATTTGAGAACTCCGCGCGCAAAGATAATTCAAACAACCCAGCTACTGCATAGAAAGCGACAGGACTTTTTGTTGGCTTTGTCTCGAGGAGTTATTCCTGATGACGATCAGCTTTCAGAACCCACAGGCTTTGTTGATAGGCTAAGTCTAATTTCACATTCAGGTGCTAGTCAAGACAGTGAGTCTGATGAAGATGAGAGCAACCTTGATGAAGTGCTTTACTCAATTGAACAGTCAATTCTCAGTTCACGTTTAGCGAAATTGGGTATAAAACAGAGCGGTGATAGGGCAGAAGGAGAACAAGCCACGCCCCTTGAAGATAGAGTCAACTGCGAAACTATTCACAAAAAATTCAACATGACTTCCTGTTACTTATGTAAACATGGCTACAGCTCCaacaagaaagaagagaaaaagaaaaAACGTCACCGCCAAAGCCAGCCAGCTGAGTTTGATGAGGAAATTGATGTAGACTTTATGAGGGCCATTCATCTTTCCCTGCTACAACACAGCACCCCAGCCAATCACAGAAGCCGAGAATCAAGCTCTTCTAGTAGCTCAGCAAGCTCAAACAGAGATCAGACACAGCCTAGGCAAGACATGGCCGCCGCCATGACAGTGTTCTCTACTGAGGATAGTGCCTCTCTACAAAGAGCCATAGAGTTATCACTTCAAGATTCTGCTGTAGGAGATATATCCTCGTCTCCTGATGACGATATCAAAAGAGCCATCAGACTCTCACTGCAGGACAGCGGTCTGCCCCCAGCGGGTAGTGATAGCAGTGGAAACACGGACAGGTCATCTTCTCAAAACCAGCGACCAACACTTCCAGCAGATAGTGAgagtgatagtgatgatgaaTTCGTTGTTTAGGTATCTCCCTCCCTCTCCCTTcctcccctctccctcccctctcctcccctctcCTCCATTGAATTGGGTAATTTGTTGTTACCTACTGTAGCCAACATGGACGTGTGAAATCCTACGCCATTTTCTCAATCTCTTCACTGTCAAAACAGCCGATCCACTGCGCCGCCTCTTAACGCGACGTCTGTGCGTCCCTTTTTCTTTCGATGTCAATACGATTGACGTCAATCGAATTACTATCGACAAATATCTAAATATCTTCCAATTTTGGTCAATGCTAGTTGGTTATGAATAATTAGCGGGGAGATTTAAGCCATTCAgaaacggtaaatatattttgaatgcCATGATAAATAATGTTAAATATAATTTCTCTATACTTTTACCTAGATATATTAAGGGGATGTCTTTGACGAAAATGTCATGATTTGCTAACAACTAGACGTCAGTGTAATTTAGAATAACTCTAACGCTAAATATGTTCAACATAAAATGTTGAAAGtaggtttttttgtttggtCATTGTTCGTCTGTTTTTTCGTATGGTTTGCGCTTACTCATACATTATGCGCAGTGTCTGGAATATGACCACTGTGGTAAGGCTGCGGtgtttggggggtgggggaaggggagCTTACCCACACCTCCTTCCCCATGCTACCGCTGCACGAGACAGACCGTGTGGTCGTTTCCTATACTATCATAATATTCAATTGCTGACATACAGGTTTAACCTGCATGAAAGTTTATCGATTAGGTTTTGTGTAAGTAGCTCATTTTAATACTTGTCACcatttttattgtattataaGAACAAAAAATCAAGTTATTGGTCTTCATTATATTAGAACGGCAAACATAGATCCCAGTAAATTTGAAGTAACGTTGAATTCTTTCTTTAGTATTGTACATCCAATCACTGTTTTATGAATCGTCAATTTTTACTTGTAAATTCTCAATAACTGTAGATAATTGTATGTAGGCTAAATATCATAGACAAGTTGAAGTAAAATaattctttctgtttttattcttaa

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005499 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF02809 all species →	UIM	Ubiquitin interaction motif	Motif	Interproscan
PF19422 all species →	Ariadne	Ariadne domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF01485 all species →	IBR	IBR domain, a half RING-finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR044066 all species →	Domain	TRIAD supradomain	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003903 all species →	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR031127 all species →	Family	E3 ubiquitin ligase RBR family	Interproscan
IPR045840 all species →	Domain	Ariadne domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR047564 all species →	Domain	Ankyrin repeat and IBR domain-containing protein 1, Rcat domain	Interproscan
IPR002867 all species →	Domain	IBR domain	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11685 all species →	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11967	ANKIB1; ankyrin repeat and IBR domain-containing protein 1	EC:2.3.2.31	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites lutea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites lutea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →