Gene detail

Detailed information of XP_073232179.1 in Porites lutea

Genomic Location: chr2:48315013...48326796
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140926324

ATGTACAACCTCGACAAAAGGAAAGGAAACACGGATTTGTTTGGAAGACATTTTTGGAGAATAGAGAATAGAGAACAAAAGGATGAAACTGAAAAGTGCTTTAGTTGGGTTTCTCTCCAACATGACATGGACGTTAGATTCTGGTATAATGGAGCCATTGATGCAGATCAGCGTATGGCGTGTCCCTGTACCCTATTTCAAGCATTTCTGGACAGGGGACGATTCGTTCGGGACTGGAACTATCCTTGGCCGAATGTGTGCTTTAGGTCCAGAATCTCTAAATACTTCCCTTATGACGATGGCGACCTTGACGATTTAGTTGGCCTTAGGACGAGCAAGCTGTGTTGCTACTCTGCGATGAGGGACGACTTTGGCTCTCTTAAAATTGGACCTCCAGACGGAAGCAGGGTCATAGCTGATCCAATTTATCTGTATTACAATGGGAGCAATGACTATAGAGCATTTTATGCTGACAGTCAAGCTTATAAATTTTGCTGCGTTGACACAAAGTTTTGTGATCTGTTTTACCTTTATCGACCAACCGATGACTGCAGTTTTTATAGATCGCCACAGAGACGTTGGTTTTGGGGTGATCCTCATTTTAGAACTTTGGACGGTCGGAATTACACCTTCAATGGCCTTGGTGAATATGTGATGATCGATGCACAAAGTGGAACATTTCAACTACAAGCCAGGACAGGCCTTGCACAAGGAAATTCAACAACTGCAACAATTTTTAGTGCTGCAGCGGCTAAAGAAAAAGAAACTTGGACCGTTGAAGTTAAAGTAAAGAGAGGAGGTGGGATGAATATACGTTTTGGACAAAAAATGTACAACAACTACGAAAGCCTGACAGACCAAACTGTAGACGTTGGTGGAAACATCTCTGTCTCCAAACCGGAGGAAAACTGTATGGAAGTTTATTTCCCTTCAACTACTTCCGTGTTGTTCTGTGAAAAAAAGGGAATGCTGTCCATAGTCGTAACACTCACGAACGATTACAAAAATGCTACCAAAGGGCTGTTGGGAACTTGGAACGAAAACCCCGATGACGACTACACATTACCTGATGGGACAACATTGTCTCCCACTTTATCCTCAAGAGAGATTCACTTTGGATTTGGCCTTAAGTGGCAAATCAACCAAACACAATCTTTGTTCACTTACGCTCAAAATGAAAGCGTGGAGACCTTTGCAAAGTCTGATTTCACACCCATGTTCGTGGAAGATATCACGTGGTATAACAACAGTGTGAGGGAATTGGCTGAGGCCCAGTGCGGAAATGATATTGAGTGCCTGTTTGATGCTGCAGCTACGAATGACGTGTCCATTGGAATAGTAACCAAAGACATAAATATTCAGTTAGTGAACGAGTCAAATACTCTTGACAATTTTCCGCCCAAGATAGTTAATGCTCCAAGTGAAATCAATGCAACACTTCACGAAACCGTACACCTGAACGTCACAGCCGAAGACAACGACACCATTAGCTTTCATATCATCAACCGTCCAGCAGGTGCCACTGTCAAGCAAATTGGAAACGTACTCTATTTTACTTGGCATGTTACATCTTCACAAAAGTTTAATTTGTCATTCGTTGCTGCTGATGAAAAGGGGGCGAGCACGACATGGAGTCCAACTATTAAAATGTGTGCCTGCAAGCACAGTGGACTCTGTGTGGAGCCAGAAGAGGGTGATACGGCCAACTCAGACATCAAATTTATTTACATGGGATGCGCATGTCAGGGAGGATACACGGGAAGATTCTGTGATAGCGAAATTGACGCCTGCGAGTTCAATGGTCAGCCGTGTTACGCAGGCGTAGCGTGCACTGATCTTCCCCCGCCGGCCAATGTCAGTGGATACACGTGTGGACCGTGTCCAACTGGTTACACTGGAAATGGAGCGCAGTGTGTTGACGTCAATGAGTGTCAGAGCATTCAAAACAACATTTGCGAACAGCAATGCATAAACATACCGGGATCATTCTATTGTGGCTGTCGTGATGGGTACAACATTAATGCTGATGGCTACAGTTGCGAAGATATCAATGAATGCAAGCCTTTAATTGCCAACTGCACGCAACAGTGCATCAATACTCCAGGAAGCTATAATTGTTCATGCGACCAGTATTTTACAACAGATCCATCTGACTGGACGAACTGCGTAGCAACGATTCCTTGTTCTTCAGATCCTGGCTGTGACCAAATTTGTTTCACAGGAGCCAACAACCAATCAACTTGCGACTGTTCGGCTAAATACGAGTTACAGAGTGATGGAAAGACGTGCAAAGATATCGATGAGTGTGATCCGGAAAAAGATGATCATCAATGCAGCCATGTTTGCAAAAATACCCCTGGAGGATATACTTGTTTGTGTCCAAAAGGATTCAAACTGAGCAAAAACGGATACAGCTGCGAAGATATTAATGAATGTGTAGATGAAGCCTTGTACAGCTGCCCGGACGAATTTCACGAGTGCGTCAACGATCTTGGTACTTACAGATGTGAATGTGGACCGAATCTTTACTTCATTGATGGAAAATGCAGAGGGCTGGCGAAGAATGAGACAGTTCCTATTCCTGAGCTACCAAAACCACGAAACCCATCAGTGGAAGAAAGAGATCACGCAGTGCGGATATCCATTCTGCAACACAGCACTTTTAAATGGGATTATACGACGGACAATTCTTTCAAAGTTGGAATGGCGTCTGTTGCAACAAAGTACTGCAATTTTAACAGTACATCATGCGCATTAAAAATTACAGGACAAGGAAGATTCGCCCTTTACTCGTCTCAGCGAGTTCATCTGCTTCCTGGTTACCCCAACAATGCGTCAGATACCATTTTGGTTGCTTTTTACATACAGCAGCCATTGGGACTGTTCGTCGGAAATCAATCAGCATTGCCTAGCAGCACATTACTGGACATTGTTCTGAAGCACAAATCAGAGATCGGCTCCGCCATTGGGGCAAATATATCCAAAGTGGAAGCTCTGTCCGGGCCGCCTTCAACGCCACGCGCTGATACTTTGAGACCCGTACAACTAACCAGCGACAAAGACGATTGGAAATGGATTATTGTCGGTGTTCTTGGTGGAGGATTAGTCTTGTTATTACCTGTTGTGACTATTGTTATCATTAAGCTTAGCAGGAAAAAGGTATTACCACAACGACATTCAAGGAAACGGCCAGTCTGGAATTACTATCTTGAGGAAGACGCAATAACGGAAAACAACATGAATGTTGAAATCATTTCCAACAGCGCAGCCTTGAACGAAAAGACAACTAATACAGCAGTCAGTTATGATAGTTGA

Transcript

rna-XM_073376078.1

TACTGTGCTTGGAATGTACAACCTCGACAAAAGGAAAGGAAACACGGATTTGTTTGGAAGACATTTTTGGAGAATAGAGAATAGAGAACAAAAGGATGAAACTGAAAAGTGCTTTAGTTGGGTTTCTCTCCAACATGACATGGACGTTAGATTCTGGTATAATGGAGCCATTGATGCAGATCAGCGTATGGCGTGTCCCTGTACCCTATTTCAAGCATTTCTGGACAGGGGACGATTCGTTCGGGACTGGAACTATCCTTGGCCGAATGTGTGCTTTAGGTCCAGAATCTCTAAATACTTCCCTTATGACGATGGCGACCTTGACGATTTAGTTGGCCTTAGGACGAGCAAGCTGTGTTGCTACTCTGCGATGAGGGACGACTTTGGCTCTCTTAAAATTGGACCTCCAGACGGAAGCAGGGTCATAGCTGATCCAATTTATCTGTATTACAATGGGAGCAATGACTATAGAGCATTTTATGCTGACAGTCAAGCTTATAAATTTTGCTGCGTTGACACAAAGTTTTGTGATCTGTTTTACCTTTATCGACCAACCGATGACTGCAGTTTTTATAGATCGCCACAGAGACGTTGGTTTTGGGGTGATCCTCATTTTAGAACTTTGGACGGTCGGAATTACACCTTCAATGGCCTTGGTGAATATGTGATGATCGATGCACAAAGTGGAACATTTCAACTACAAGCCAGGACAGGCCTTGCACAAGGAAATTCAACAACTGCAACAATTTTTAGTGCTGCAGcggctaaagaaaaagaaacttggacCGTTGAAGTTAAAGTAAAGAGAGGAGGTGGGATGAATATACGTTTTGGACAAAAAATGTACAACAACTACGAAAGCCTGACAGACCAAACTGTAGACGTTGGTGGAAACATCTCTGTCTCCAAACCGGAGGAAAACTGTATGGAAGTTTATTTCCCTTCAACTACTTCCGTGTTGTTCTGTGAAAAAAAGGGAATGCTGTCCATAGTCGTAACACTCACGAACGATTACAAAAATGCTACCAAAGGGCTGTTGGGAACTTGGAACGAAAACCCCGATGACGACTACACATTACCTGATGGGACAACATTGTCTCCCACTTTATCCTCAAGAGAGATTCACTTTGGATTTGGCCTTAAGTGGCAAATCAACCAAACACAATCTTTGTTCACTTACGCTCAAAATGAAAGCGTGGAGACCTTTGCAAAGTCTGATTTCACACCCATGTTCGTGGAAGATATCACGTGGTATAACAACAGTGTGAGGGAATTGGCTGAGGCCCAGTGCGGAAATGATATTGAGTGCCTGTTTGATGCTGCAGCTACGAATGACGTGTCCATTGGAATAGTAACCAAAGACATAAATATTCAGTTAGTGAACGAGTCAAATACTCTTGACAATTTTCCGCCCAAGATAGTTAATGCTCCAAGTGAAATCAATGCAACACTTCACGAAACCGTACACCTGAACGTCACAGCCGAAGACAACGACACCATTAGCTTTCATATCATCAACCGTCCAGCAGGTGCCACTGTCAAGCAAATTGGAAACGTACTCTATTTTACTTGGCATGTTACATCTTCACAAAAGTTTAATTTGTCATTCGTTGCTGCTGATGAAAAGGGGGCGAGCACGACATGGAGTCCAACTATTAAAATGTGTGCCTGCAAGCACAGTGGACTCTGTGTGGAGCCAGAAGAGGGTGATACGGCCAACTCAGACatcaaatttatttacatgGGATGCGCATGTCAGGGAGGATACACGGGAAGATTCTGTGATAGCGAAATTGACGCCTGCGAGTTCAATGGTCAGCCGTGTTACGCAGGCGTAGCGTGCACTGATCTTCCCCCGCCGGCCAATGTCAGTGGATACACGTGTGGACCGTGTCCAACTGGTTACACTGGAAATGGAGCGCAGTGTGTTGACGTCAATGAGTGTCAGAGcattcaaaacaacatttgcgAACAGCAATGCATAAACATACCGGGATCATTCTATTGTGGCTGTCGTGATGGGTACAACATTAATGCTGATGGCTACAGTTGCGAAGATATCAATGAATGCAAGCCTTTAATTGCCAACTGCACGCAACAGTGCATCAATACTCCAGGAAGCTATAATTGTTCATGCGACCAGTATTTTACAACAGATCCATCTGACTGGACGAACTGCGTAGCAACGATTCCTTGTTCTTCAGATCCTGGCTGTGACCAAATTTGTTTCACAGGAGCCAACAACCAATCAACTTGCGACTGTTCGGCTAAATACGAGTTACAGAGTGATGGAAAGACGTGCAAAGATATCGATGAGTGTGATCCGGAAAAAGATGATCATCAATGCAGCCATGTTTGCAAAAATACCCCTGGAGGATATACTTGTTTGTGTCCAAAAGGATTCAAACTGAGCAAAAACGGATACAGCTGCGAAGATATTAATGAATGTGTAGATGAAGCCTTGTACAGCTGCCCGGACGAATTTCACGAGTGCGTCAACGATCTTGGTACTTACAGATGTGAATGTGGACCGAATCTTTACTTCATTGATGGAAAATGCAGAGGGCTGGCGAAGAATGAGACAGTTCCTATTCCTGAGCTACCAAAACCACGAAACCCATCAGTGGAAGAAAGAGATCACGCAGTGCGGATATCCATTCTGCAACACAGCACTTTTAAATGGGATTATACGACGGACAATTCTTTCAAAGTTGGAATGGCGTCTGTTGCAACAAAGTACTGCAATTTTAACAGTACATCATGCGCATTAAAAATTACAGGACAAGGAAGATTCGCCCTTTACTCGTCTCAGCGAGTTCATCTGCTTCCTGGTTACCCCAACAATGCGTCAGATACCATTTTGGTTGCTTTTTACATACAGCAGCCATTGGGACTGTTCGTCGGAAATCAATCAGCATTGCCTAGCAGCACATTACTGGACATTGTTCTGAAGCACAAATCAGAGATCGGCTCCGCCATTGGGGCAAATATATCCAAAGTGGAAGCTCTGTCCGGGCCGCCTTCAACGCCACGCGCTGATACTTTGAGACCCGTACAACTAACCAGCGACAAAGACGATTGGAAATGGATTATTGTCGGTGTTCTTGGTGGAGGATTAGTCTTGTTATTACCTGTTGTGACTATTGTTATCATTAAGCTTAGCAGGAAAAAGGTATTACCACAACGACATTCAAGGAAACGGCCAGTCTGGAATTACTATCTTGAGGAAGACGCAATAACGGAAAACAACATGAATGTTGAAATCATTTCCAACAGCGCAGCCTTGAACGAAAAGACAACTAATACAGCAGTCAGTTATGATAGTTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00094 all species →	VWD	von Willebrand factor type D domain	Domain	Interproscan
PF14670 all species →	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001846 all species →	Domain	von Willebrand factor, type D domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR051495 all species →	Family	Epithelial Barrier and Cell Signaling Protein	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR005533 all species →	Domain	AMOP domain	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13802 all species →	MUCIN 4-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005176 all species →	Molecular Function	ErbB-2 class receptor binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0010469 all species →	Biological Process	regulation of signaling receptor activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_073232179.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.