Gene detail

Detailed information of XP_073233052.1 in Porites lutea

Genomic Location: chr2:840362...853808
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073376951.1

TGACTAAATCTTTGGCGCACAGCGGTGTTACAAAATAGAACAACACCAAAATGGCTGCCCTGCAAGAAAGGAAATTACAAGAAGGGCAACAGCTCTTGAAAGAAGCGGAAAAATTTATGAAGACTAGTTGGTTGAAATGGAAGCCAGACTGGGATAGTGCTGCTGATAAATTCATGAAAGCTGGTACATGTTTTAAAGCTGCCAAATGTTATGACAAGGCCAGCAATGCTTTCAAAAAGGCAGCAGATGCACACTACAGTTCTCATGCACTGTTCCATGCAGCTAAAGCATTAGAACAGGCTGCCTCAGTTCAAAAAGAAATGAAGAACATTTCAGAAGCTGTATCACTAGTGGAAAGAGCAGTTGACATGTACAGACAGAGTGGTTCTCCAGATACAGGTGCCCTAGCCCTTGTAAGAGGTGCCAAGATGTGTGATTCAAGTGATCCAGCTAAAGCTGCAGAGTTATACATTTTAGCCAGTGAAATGAATGTTGCAGAGGACAAGATTCGAGAGGGTATTGAACCTTTGTCAAAAGCTGCAAACCTCTTTGTAAAGTTAAAGAGATTTCAGGAGGCTTTGAATGTCTTCAAACAGCAGATGAAACTGTACGAACAGGtggaaaattttcaaatgatGTACAAGGTTGTTCTAAGTATGGTCGTTGTTCACCTTCATGAAAGCGATTACGTAGCTGCAGACAACTGCTACAAGAATTCTTTTGAGATTCCCGGATTCGGTGGCTCAGATGAAGCAGTCGCCGCAGAAAAAATTTTGGATTGTTTTGACGGGGGCGATGGTGAGGGAATGAAAGCTTGCACATCACAAGCTCTCTTCACCTACTTGGACAATGAGATTGCCAAGTTGTCCCGCAGCTTGCGTGTTCCAGGTGACACAGGTAACAAAGGAAAGACAGAGAGAAAACCGACTCCAACCCTGAATGCCTCTGTGAAAACCGAGACACAAATTCCCAACCCAGTGTCTACTACACCCACGTATCAGACAGAACAAGGGGGAAACCAGGAGGAGCTCGATGATGATCTTGAAGAAGGTGGACTTTGTTAGAATGTGTTTTCTCGTAACAAAGCCATACTCAGACAAATAATCGCagaagttttcaaaaaggaGAGACGCATAGTCTCCCTCGCGCGCAGCCGTCAAGCAGCCGTCACGCAGAAGGAGCCCGGGCAGGCAGCTGATAGTTTTTTTGGCATAATTGTCAGTGAGAAATAATTTAAAAGATCTTCTGCCCACGCGGAACGCTGAGGTGAGGTCATAGCTCACACATTGtactaaatttatttttatgatGATATTTATATAAATGACTGCCAATcttttgtgtatttttaaatCAGTTATGGATAACGAGTAAAGTTTCCAAAGAAACTATTGTGGTTTGTCTTCAAGCGAGTGAAACACATAATATTAGATTGCTTATAAATTGCCCATTTAGGCTATCCCAAAATGGATTAGACCTAAGAAGCTCAAAAGACCTATCATGTGTAgctttgaaaattaaagataatTTAAATTCTGATCTTGATTGTCttttgcgttttatttattattcaagtTTGATACTTTTTCGATCGAAAATGATGCAGTGGACGTTACATGGCATCTCTTGAGTCACTGGAATTTCGGCTGCGAGATGCAGCTGCATAACGTtaaatttttctgttcattaaTTCGATAAGAGCGAACATTACTTCTGTCAATTCCCTTGGCGGCAACCTCCAATGCCTTGTCTGCCTTTTTATCCATGCTTCGGAGGCAGGCTGATTGCCCAGGGTTTAGGATGTTGAACAAATTAGGTTTACATGCCCGATCCCCTGCCGGCCCCGATCAATCACTAGTTTTCGGTCTGAATTTGTGTTGCCGATCTAAGGTTGGATGACATTCTTTTATCCTGGCGCACTTAGACATAATGAGTGGACACAAGACTGTGATGTACATGTACGTTTAACTTGGTTTAATGTTCATCTGTGTTTCGTTATCAACATTTGATTACTTGCTTTCGTTCATAATTAGAGTATAAGCTCCTAATCGAAGGAAACCACGTCTTTGGTTTAAAACCGATTTTCTTAGGTAGAAAGTGTGGTCTTGTCCATAGGTTTTGGGTTTGCAAATGGCGAAGAAATGATTATTTAAACCAGCTATTATTTCTTTCAAGGTATGATGAAGGTTGACTTGACTCTAAGCACGCTTAAAAAGTCTTCTGTTGCGCTTTACAATCAGTGTATGTATGTTTCTATCACACGATTACACAGAGAACATGGACAGTAAGTGAATTAACCACAGCAACCGTGAGTGGCATCCTTTATTTCTACTTTACTTATGGATGAAAACCACCACCACTAGTTTAATATGAGTTCCAATGTTATGTGTTCGTCTCTCTGAAGAAACTGGTGTCAGAA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004765 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14938 all species →	SNAP	Soluble NSF attachment protein, SNAP	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000744 all species →	Family	NSF attachment protein	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13768 all species →	SOLUBLE NSF ATTACHMENT PROTEIN SNAP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005483 all species →	Molecular Function	soluble NSF attachment protein activity	Interproscan
GO:0005774 all species →	Cellular Component	vacuolar membrane	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21198	NAPG, SNAPG; gamma-soluble NSF attachment protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.