Gene detail

Detailed information of XP_073233996.1 in Porites lutea

Genomic Location: chr2:27544776...27555384
NR annotation: no NCBI-NR hit recorded
Species abbreviation PLUTE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073377895.1

atggcggccaaacgAAAATCACAAGGTGGTCGCGAAGATGACGACGATTCTTCAATTTTGCCGCACAAACGACATGAAAACACGACTTCACAAGATGCAACGACTTATTATAGCACAGAATCTTCTTATGGCGTTCAGTGGTACGAACAGCGCGGCCAGTGGATAGCATTGTATGACTGGAATAGTggacattattattatcaaaatatCAGCGATCATAGAACGCAGTGGGAGCAGCCAGCAGATTGGGATTCTATTCACCCTCTGTATATACCAGTAAACCAGTACAGTGCGGGATTTTGTAATGAGTCGGTGAACAGAAAAGTCGATACATCAAAAGATGTTCACGAGGAAGAAAACTATAAGATATCTGCAGGCGATTTGGAAGCGAAGGTTCAGCTGTTTCTCAGTCGTCCTGCTCGCCGACAGATCGATccggaggagaagaaaaaactACACTGGATCCCTGAGGGAGCTACTGAATATAACATTTGGTATGATCGCTGGGTGGGAGAACACTGGAGAGCAGACAAAGACCATGGTCCTTCAGAGACAAGGTGCTGTTTAGAAACAGATGCTGGATTCACAAAAGCCAACGTGTATGAACCGGGTGGAAACAAACATTATTTCTGTATCTACTTCGCTAGAGGGTGTTGCCATTTGGGGTCTGAATGTGGATACTTTCACGTGATACCCACAGATAAAGATGAACAAAGAATTGATCTTGCCCATGACGTTTTTGGCCGAGAGCGTCACCGCCTTCACAAGGATGATATGGGTGGAGTGGGTACATTTGACAAGGAATGCAGGACACTGTATGTTGGAGGATTGGCTAATCGAACTAAACTGGAGAAACTTCTGTGGTCTGAGTTTGGCGAGTGGGGTGAAATTGAGGACTTGAGAGTAATACCAAAACGCAACATCGCGTTTGTGCGCTACAAGAACAGGGTGAATGCGGAGTTTGCAAAGATCGCAATGTCAGACCAGAAGTTAAACAATAGAGAATTGCTCAATGTAAGATGGGCTTTTGATGATCCTAATCCTAAAGCAAGGAAAGAGgaactTTTAAGAGCGAAAAAGAAGGTACTCGAGGCCGCATCAGAGAGAGGTTTACTTCAAAAGGCGCTTTTGCGCCCCCGTGACCCACCAGGTGGCCAGATAACTGGGCCCTATCCAGATACAAACAACCAGTACCCCGTGGAATGTGGCCCAATGAGCAAGGAACAGTTCGAACAGGCTGAAATACTAGAGAATGTGTACACAGACTGTACGAGGTTGGACGAGGCTCTGAAGAGAGGAGAGGCTCTCCACGTTAAAGAGGCGGACAGTAGTCAAGCAGCTCATTCACAGTCCTCTGAATACTCTGAGTACAGTAGTGCAGAGAACACACAAGCTACAGAGACAGATTGGAACAGTGATAATAATTACTCAGGATATTATAGTTACGATTATAGCCAAGCATGGGACTATTCGCAGTATTATCAAACTGATGACTCGTGTTCAACTAAGGATCCTTACAGAGAGATACTTACGTCCAGCGCTAAAGACAATTCCGAAGCTTCCAATAGCTAACGAACCAAGGTCTGATCTTGAATCGACGGGTACGTTAGTATGCCAGGGAGTGCCCTACTTGCTAACGAACTTAGCTCCGATGACGGATCGATTGAGACCCAATTACACGTCAAAGAATCTACAGCTAgtagctagcctgcgtagcaatcGTTTCCGTGCAGTTTAGGAACTAAGAAAGAGGAACGAGTGCCAAAGACCGCGATAAAAATGGCGCGAGttaaagagcggggagggggtggggaagaaagggaGGAACTTCATATTTCCTTCCTTGCCCTTCCCCTctccctctttcattttttggctctcgttccGTTTCCCTTTCTCATTTTTCGATCCCCGAATCGACTGAGGGCAGAAGAAACGCCCATGATTTCATTTACGAACTAAAGTTTGGATTCAgttttccaagtcttttctCCCTTCTAGAATAAACCTTCTTCACAGGCTTTAGGATGGATGGGATAAAAGGGATGTCACATGGTATTTCCGGGGGGGGGGCAAACTGATGAAAACATTTGCCAATACGAGTAATCGcagtcgagtttgtttattctctcagATCGAGACCACAATTTTAGTCTCGCTGAGAATGCACAGTTCGAGGACCGACAGGTTTTTACGTCATTATCGCTTGCTATGAGGACGTGCACAGTCGCTGCtgtatccaaaaatgggaacaaTGATCACTTTCAGCCACAATTTGCCATTATCGTCTCAACGATGACGTCGTTAATTTACTACAACAAACAAAATCCAAGCGTTTCTTTGAGATGATcgggatcaggatcagtgatcctaCATCACTTGAaccatggtagatcaaatgaaccgatgaatcgtTGTCCGGATCACTGATTCTGATCAGGATCATCTCAAAGGAATGCACCCTAAGACTCCCGTTCCTTAAACCGCACTGGGATTaataaatttgaagaaaaaagaaaaaacgaaatgaattgtGGTAGCTGTGGTTCAATGACGTCACTGTGGAGATGCACTGTGTTGCAGTGCGTTACaaagcgttttcactcacgtgacttgCATCTATGTAAATGtattgcaacaaaagaaagcgttttcaTTAGAAAAGAGTGCAAATCCCACC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF16131 all species →	Torus	Torus domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR034181 all species →	Domain	Pre-mRNA-splicing factor Cwc2, RNA recognition motif	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR039171 all species →	Family	Pre-mRNA-splicing factor Cwc2/Slt11	Interproscan
IPR032297 all species →	Domain	Torus domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14089 all species →	PRE-MRNA-SPLICING FACTOR RBM22	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000974 all species →	Cellular Component	Prp19 complex	Interproscan
GO:0017070 all species →	Molecular Function	U6 snRNA binding	Interproscan
GO:0036002 all species →	Molecular Function	pre-mRNA binding	Interproscan
GO:0071006 all species →	Cellular Component	U2-type catalytic step 1 spliceosome	Interproscan
GO:0071007 all species →	Cellular Component	U2-type catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27398	CWC2; pre-mRNA-splicing factor CWC2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.