Gene detail

Detailed information of XP_073234002.1 in Porites lutea

Genomic Location: chr2:27875249...27878124
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073377901.1

GTTGCAGATATTTTTGCAGACGACTTTAGCTCTATCATCTGCACTCTCTTAATGGCAATTTTACTCAGTGTTCTGACATTCACTGCAAGGAAGGTTTATAAGCAAAATAAAGAatgggaagagaaaaaaagatggtGGAAGGAGGGTGTGATCTATCACATATATCCGCGATCATTTCAAGACTCCAATGGCGACGGAAATGGCGATCTACAGGGGATAACAAAGCGACTCGACTATTTTGAATTTTTAGGAATTAAGATCCTTTATCTAAGCCCGATTTTTAGGTCTCCTATGGTGGATAACGGCTATGATATCTCGGACTTCAAAGACATTGATCCCATGTTTGGAAATTTACAAGACTTCGAGGAGCTTCTAAAAGAAGCTCATTTAAGGGGCATGAAACTAATACTGGACTTCGTACCAAACCACACATCAGATCAACATCCATGGTTCATTGAAAGCCGTTCTAGTAAAGCCAATCCTAAACGTGATTGGTATGTCTGGCTTGACCCCGCCCTTGGGGGTGGACCCCCTAATAACTGGGTTAGTGTCTTTGGAGGGAGTGCATGGACATATGATGCTAAAACTAATCAATACTACTTACATCAGTTTTGTCCTGAACAACCAGATCTGAACCTCAGGAATGCAGAGGTGCGGGATGCTCTCAATGATGTTCTAACATTTTGGCTTGACCAAGGTGTGGATGGATTCAGAGCAGATGCTGTCGCCCACCTTGTTGAAGATTCCAGATTTCAAGATGAACCCACTAAGGATGGGTATGACACAAAGCGTCCTCGGTATGATGACTTGGATCATGTCTACACCAAAAATTTTACAGCCAATCACAAAATTGTTCAGGGGTGGAGATCAGTACTTGATCAATACAAAGATTCCTACAGAATTCTGATTGGTGAGATCTTGGATGATAATTTCCAAGAAGTTATCAAATACTATGGTGGGAGATTTTCGAATGAGTTTgattttcccttcaattttgGTTTGCTGGGACTAAGTCAAACTACTAATGCAAAAGAAGTTTATCATGTGATCTCTGATTACTTAGCTGCCCTTCCAAAAGGTAAATGGCCAAACTGGCTCCTGGGAAATCATGATTTTCCAAGGGTAGGCAGCAAAGTAAGCCATGAATATTCCCGTGCACTAAATGTTCTTCTTCTTACTCTACCTGGAACTGCTGTTACTTATTATGGTGAGGAAATTGGAATGATTGATGCCAAAGTTCCCGTTAAAAGCCAAAAAGACTTTAGGGACCCCCAAAGATCACCGATGCAGTGGTGTGACAAGGAAAATGCTGGGTTTACATCTGCAGATAAAGCATGGGTGCCAGTGGCAGAGAACTATAAAACCGCAAATGTTGAGGTCCAGAAAGCAGATCCCACCTCGGCACTGTACCTGTACAAGGAACTGGTAAATCTAAGGAGCACAGTTGAATGTTTTAAAGGACTCAGTTTTAAAGCTGTTCATGTAGATGCTTCAGTTCTTGCCTTTACAAGGTCAGACAGACATCACACATTTGTCATAATGATTAACTTCAGTAAGGAGAGATGGGAGGGATCACTGAATGGAATTTCTGGTTGTGGAGTTGTTGTTATTGACAGTGAAATGaaactgaaaggaaaaaatgtttcctttgTTAGAGTTACACTAAACGAAGCACAAGCCCTTGTAATTAAAATGCAGTGACCACATAGCATCATTTGATTTCAAAATACAACTGCAATAATACatgtacttttctttttttaacagtcaatgttatcatttattcattttttatctaACTATATACTTTGTTGTGTATATTTGTGATAATAAAATCTTTTTTGCCTAGTACATTCAGCTGCTGGAAGGGGAGTACTTAACAAACTTTATTACAGGGAGGCCCTGCCCTATTTTTGAGagaaaagataccccttttatatacctcCCATTGACAATTattaaataactaagatagtacacatgcactgattggctgagaggtgTGTTTGCAttagagtatgtaaacatggttgtgacgtcaagatgctttgcttttcgcgcgctaatcatgCAAGCacgaaattgaaaaagtttttgagttgaaaactcgacaagtttactttataatCCATTCCCTTCTTggctgaaacttgaaaaatctttacaaacacgCTGTGTCAATTCTTTTTTTGCTTAAACTGATATTTTAAGCAAGGAAAAtgcatattttggaaagcatctttttttcCTGTACACGACTTCGCGACTGTTAAGAATTTTTCCTTTAATCAGaaccataacaaagagttttacAATTTTACTCGGGAAAGTTAAATTatgaaagcaatagaaaacttttttcttgtatttgcatagcctgatataaacactccaGAAGTTGGGAAaattcttgacagttatgcaaacccttgacttcgtctcgggtttacATAACTGtgtcgaattctcccaacccctctcacgtttatatcaggctatgaaAACAAGGAAAACGTTTTCGATTGCttaaatggtacccctttcacatccCTAGTTTGGAACTTTGCATTCcatttaactgctgtaaatacactgtttttaaaatatgaataaatcacaaaaccagaatgTTTTCTTGACATTTTCACGCCATAAAATGCaactgttagcccttttgggcctttttacagaccaaaatgacagattttccctaTTTTACTTGAAACCtcaaaaggtacccctttcaggtggagcctccctgtataggaAATTATAAGGAGTATCCCCGCCCCTAAGGATATTTAGGTGCTGTAGAAATAAAAAGTCTATTAAACGTCCATCACAGTAGATGTGAAAGAATACTAGTTTTGGGAAAA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003162 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00128 all species →	Alpha-amylase	Alpha amylase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045857 all species →	Homologous_superfamily	Oligo-1,6-glucosidase, domain 2	Interproscan
IPR006047 all species →	Domain	Glycosyl hydrolase, family 13, catalytic domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10357 all species →	ALPHA-AMYLASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01187	malZ; alpha-glucosidase	EC:3.2.1.20	Starch and sucrose metabolism	ko00500	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.