Genomic Location: chr2:37763437...37808675
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families
| CDS |
| LOC140928543 |
| Transcript |
| rna-XM_073378295.1 |
| Protein |
| XP_073234396.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000507 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00050 all species → | Kazal_1 | Kazal-type serine protease inhibitor domain | Domain | Interproscan |
| PF01759 all species → | NTR | UNC-6/NTR/C345C module | Domain | Interproscan |
| PF07648 all species → | Kazal_2 | Kazal-type serine protease inhibitor domain | Domain | Interproscan |
| PF00014 all species → | Kunitz_BPTI | Kunitz/Bovine pancreatic trypsin inhibitor domain | Domain | Interproscan |
| PF00095 all species → | WAP | WAP-type (Whey Acidic Protein) 'four-disulfide core' | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008197 all species → | Domain | WAP-type 'four-disulfide core' domain | Interproscan |
| IPR036645 all species → | Homologous_superfamily | Elafin-like superfamily | Interproscan |
| IPR036058 all species → | Homologous_superfamily | Kazal domain superfamily | Interproscan |
| IPR000716 all species → | Domain | Thyroglobulin type-1 | Interproscan |
| IPR002350 all species → | Domain | Kazal domain | Interproscan |
| IPR018933 all species → | Domain | Netrin module, non-TIMP type | Interproscan |
| IPR036880 all species → | Homologous_superfamily | Pancreatic trypsin inhibitor Kunitz domain superfamily | Interproscan |
| IPR008993 all species → | Homologous_superfamily | Tissue inhibitor of metalloproteinases-like, OB-fold | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR002223 all species → | Domain | Pancreatic trypsin inhibitor Kunitz domain | Interproscan |
| IPR001134 all species → | Domain | Netrin domain | Interproscan |
| IPR020901 all species → | Conserved_site | Proteinase inhibitor I2, Kunitz, conserved site | Interproscan |
| IPR036857 all species → | Homologous_superfamily | Thyroglobulin type-1 superfamily | Interproscan |
| IPR003645 all species → | Domain | Follistatin-like, N-terminal | Interproscan |
| IPR050653 all species → | Family | Protease Inhibitors and Growth Factor Antagonists | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10913 all species → | FOLLISTATIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005576 all species → | Cellular Component | extracellular region | Interproscan |
| GO:0030414 all species → | Molecular Function | peptidase inhibitor activity | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0004867 all species → | Molecular Function | serine-type endopeptidase inhibitor activity | Interproscan |
| GO:0005615 all species → | Cellular Component | extracellular space | Interproscan |
| GO:0007275 all species → | Biological Process | multicellular organism development | Interproscan |
| GO:0030154 all species → | Biological Process | cell differentiation | Interproscan |
| GO:0030510 all species → | Biological Process | regulation of BMP signaling pathway | Interproscan |
XP_073234396.1.Genes whose expression across the transcriptome samples of Porites lutea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Porites lutea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
