Detailed information of XP_073234829.1 in Porites lutea

Genomic Location: chr2:49793162...49803152
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001175 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00230
all species →
MIPMajor intrinsic proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023271
all species →
Homologous_superfamilyAquaporin-likeInterproscan
IPR000425
all species →
FamilyMajor intrinsic proteinInterproscan
IPR050363
all species →
FamilyMajor Intrinsic Protein/AquaporinInterproscan
IPR022357
all species →
Conserved_siteMajor intrinsic protein, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43829
all species →
AQUAPORIN OR AQUAGLYCEROPORIN RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0015267
all species →
Molecular Functionchannel activityInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0055085
all species →
Biological Processtransmembrane transportInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0006833
all species →
Biological Processwater transportInterproscan
GO:0015250
all species →
Molecular Functionwater channel activityInterproscan
GO:0015254
all species →
Molecular Functionglycerol channel activityInterproscan
GO:0015793
all species →
Biological Processglycerol transmembrane transportInterproscan
GO:0016323
all species →
Cellular Componentbasolateral plasma membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09877AQP9; aquaporin-9-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites lutea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites lutea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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