Gene detail

Detailed information of XP_073237004.1 in Porites lutea

Genomic Location: chr3:41892301...41911712
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073380903.1

atttcaagaacTTCACGAATGACACGAAATATGACATGTTGAGCCCGCGAATGCAGTCCTGCGGATTTGGCAAGTCAAATCACGTGAGTAGAATAAACCGCGTGATTTGATTGGTTGCTGTCGTGTGTTTGAAAGAAAGGGAGGGAAAAAACGAACAACATGGTTGCATGACAGTCTTGTGAAGGCGGTTTCTTCTTCGTTCAAAATTGGTTTTTACAGTGTGTTTTTGAGGCGTTCAAGCTTATGAAGGAATCCGTTATGTCTGTCTCCTCGCTTGTTGGAGCTTTTGATGACATCGTTCGCTCCACTTCAGTGCTCGCcgaaggaattgaaggagAATTCATTAAGTTCGTCACACAACAAGAAGAATGTCGGAAGAAGTGGCTTTCTGCCGAGAATGAAGCTATCCGACTAAAGCAAGAGATCGCAAAACTCCAGgCAGAAAATGAAGCACTTGAAGTTAAGTTGAAGCACGCAAGGAGCCAAGTTGAAATAGAAATCAAGAAGAGGATGAAAGCTGAAGCAACTCAAGACCATTTGGAGAGACAAGTAGCATTGATCCGCGAACTGTTAAATGACAAGGACACCATGAGCAGGTTAAATGACAATGAAAGACAGACACTAATGCAACTGAGCCAGTGTCACCATGATGACATGACCAGTCCAAGGAAAAGGCGCTTAAGTGTTCAGGATGAATCCACTGGATCTATCTTATCTCCATCAGATATCAGTTACGACAACACAGAGGATGACTTGGATGTCTCTCAACCCAAGAGAGTTTCAATACACAGAAAGCCTCCTCCTACAGCTCCAGAGCTTGATGTTACTCCTCCTAAAAGGCCGAGAAAGGATGAGCATGATGCTCCAGTGATTGTACAACCCCTTATTCCAAGCAGTCCAGTCCATGTTCCAGCTTATCCAAGTCAACAGACCTATGTGCAACCATCCGCTCCAGTTGATATAAATTACCGAGACCCATACAGGCATGCCATAAGAGAGCTTGAGAGGTACACCAGCCCAAAGAAGGAAACTCCACAAATGCAGAGAATTATTTCACAAACTGGCAGCATAGGACCAGctaaaaaagacaaaAAACATGCATTCGTCTCCAAAACTGTAATCAAGCCTGAGAGCTGCCAGCCGTGTAACAAGAGGATAAAGTTTGGAAAACTAGCCTTGAAGTGCAAAGATTGTCGTGCTGTGTGCCACCCTGACTGTAAAGATCAGCTTCCGCTTCCTTGTGTGCCCTCTAATGACACTCCAGGATCTGGCAGACGTCGCCCAGATGAAAACATCGAGTTCTATGCTCCCACTACGAGTCCTATGGTGCCAGAGATTGTTGTCAGATGCGTTGAACAAGTTGAACGTCGCGGACTTGCCGAAGTTGGAATCTACAGAGTGCCAGGAGCTGAACGAAGTGTAAAGGAATTAAAGGAAAAGTTTCTGCAAGGAAAGACCACTGACTTGAGCAAAGTTGAAGACATTCACGTTGTGTGCGGATTGCTCAAAGATTTCTTCAGGAAACTGGCCGAACCACTCCTTACGTACAAACTTTGGTCGGCATTCGTGGATGCTGCAAacaaGACAGATGAAGATGATAGTGCGAGTGCTACATATCAAGCGGTCAGCGAACTGCCTCAAGCGAACAGAGATACACTGGCCTTTTTGATGGTTCATTTACAAAAGGTGGCTCACTGCACCGAATGCAGAATGTCGTCCAGTAACTTGGCCAAAGTTTTTGGCCCTACTCTTGTCGGAAACTCTTCAACGGACATTGAACCAATGCAAATGTTACAGGAGGCGAAATGGCAGCCCAAGGTTGTTGAGCGACTCCTGTCGATGCCCGTTGACTACTGGAACCAATTCATAAACACAGATGATGAGAACATACGATCTCCCCCATATAACCCTTCCACACACCGGGCGGACGGAACTCCTATCACCCCCGAGTGTAGACCAGTGCCCGAAAGCATGCTTGGACCAGTAACATCGGGCAAGTCTGTGAAGAAGAAAGGCAGCATCCTGTCCAGGACTCCTTTGACACCAAGGTTCGGAAGCAAGAGCAAGCATCCTAACAAACGGCCGACGCACTTCTTTGCTTCTCCGATGTTGAAATAGATACCAAGATGATATAATTAATTTTAGTGGTAGTACTGGGTCTTTGTATAATAGTTATACAACCTTTATAGTTGATACACACCTCATGGTCACTTGTGTGACCCACCGTGCCATACGACATTTTAAAAAGGCCGATACGGATGTAAGTGTCTCTTATTGAGACACAGGGATGTCAAAACCCGATTCGTATCGCGAGAAGGAATTTAAGGGGTATGTTATCAAGAAAAGAGTATTTCTCCGTTTGCGAACGAGTTGATTTGTTATTTTGCGGCATCAGCGGATAGTTTTTgacaatatttgttttttaggATGAGTTGCTACATGTCTGTCTTTCAAACAAGTGTTAGGGCAGCTACtttcatttactgttttgttccTCATAGTTTAAATAAATTCGTCCAGCTAGGAGGAAAATTAATGTGCCTTGTAACTTCGTGCACTAGACTATGAGCAGTAACATCTCTCTGTTGTGTTTCTGGGGCTTTTGAAGCCTCAATTCTTGCAAACTATACTCTCATTACAAGGCAAGAGTTTGTACCATACAACAGTTAAAAGCACCTAAAACATGAGTACATTGTTCACTCAGTTTTATTTGGTTATTTGCTAGGCTTGTATTCCTTTGTACATCAAATAAAAGCCGGGGACCTTGTTAACAGATTTCGTCAGTATACTAGACTTGCTGAAAATGCCAATATTACCAGCACTCATTTACCACGACGAACAACTGGGAAACAAATTATGTACATTTATGTAGAAGTACACTTGTAGTAACTTTAATTTATCTTCCTTTATCAAGATCGTTGACTGCCTCCTTTGTAATATTATTTACATAGATTAAACCAACAGTCGCATAATTTGCAGACTGGTTTGCGACAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46199 all species →	RAC GTPASE-ACTIVATING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007266 all species →	Biological Process	Rho protein signal transduction	Interproscan
GO:0030496 all species →	Cellular Component	midbody	Interproscan
GO:0032154 all species →	Cellular Component	cleavage furrow	Interproscan
GO:0051233 all species →	Cellular Component	spindle midzone	Interproscan
GO:0051256 all species →	Biological Process	mitotic spindle midzone assembly	Interproscan
GO:0097149 all species →	Cellular Component	centralspindlin complex	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16733	RACGAP1, Tum; Rac GTPase-activating protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.