Gene detail

Detailed information of XP_073237019.1 in Porites lutea

Genomic Location: chr3:42350560...42386445
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140931165

ATGGCTTGTTCCTGGCCTCGATTTAACACCGTTTTGTTACTGTCTTTACTGACAATTCCGAAGCTATCAAAGCCCTGTATTCGAATTCTACCCGAAGAGGGTGGTTGGAAGCAAATGAGCGTAGGAGAGCGTGCTAAACTTGTGAAAGTCGTTTTCATCGGAAAAGTGATCAATCTTTACACGGTAGATAAACTCTCGGGAACTTATGCCGCGGATTTTGAAATATGGAGGATTTTAAAAGGGAGAAAGATCGTGGACGAAGTCTTCGAAATGCATCGCTCTTCACTTGTCAAAGTGTATGGGTTTGGAGAGAAGAGACTGTGTTATTCGCCTGTCAAGCCGGGAGATGTTCATATGGTGTTCATGGTCTACGAACCGGCTTCTCGTTCCTTGGTGGCGCGGTACGACGATATATTCGGGGCGACAGCCGCTCCAACAGCCGCCAACGAGAACGAAGTGCTGCAGGCATTAGGTTGGAAGCCTTGGTCGAGTTGGAGTAAATGCAGCAAAAATTGCGATGGTGGGAAACAAACTCGAACGAGAGCTTGTTCTGTTAAGGAATGCGATGGAAGGACCAGACAAACGAGATCGTGCAACACTTACGAATGCGACGGTTTGAAAGACATTGTACGTCACGTTCGAGAAGAACAAACACCACCTGCCTCGAAAAATGAAAACATTCATCTGAAAAATGGACGCATGCCGTCAGTAGACGTCTCCAAAGTGTTCCGTTACTACTTTCCAGGGGAGTTCTCCATAATCATGACTTTCCGAACAACGAAGATTACAAACGTTTATCTGTTGGCGATGTATTCATATGGCAAAATTATGACTTTAGGGGTGCGATTGACCCCAAAAATGTTAAGTTTTGAAAGAAACTCTCTTGTCCTTAATCATCGCTGGTCTTTGGACTTTCCTGTTGAAACACGCAAGGGACAGTGGTACAGTTTAGGTATTAGTGTCCAGAAAAAAGAAGTCACGGTCTATTGGAACTGCGAAAAGATTGGAACCAGGAGCTTTCTCGAAAGGCTCTCATTTATTCCGGACTCACTTGGTAAAATTTATCTCGGAAAACCACTGCTTGTGTCCTCTATAGAAAGTTATGAGATTGATGTTAGTGAGATGTACTTTGTCCCAGACCCCGGTGCGTCTAAACAACAGTGTGATATTCCAATTTTCAAACCAAACCTACTTCCATTTGAAGGCAGCGGAGAAGACGACGAAGGATCCGCCGGTGGTGGTACGCCAGATATTGTTGACCATCCTCAAAATGAAGTTGAAATGTCGTGGACTGAGTGGTCCAAATGCTCTCGTTCGTGCGGCAAGGGAACTAGAAAGCGAGTTATGATGTGTGACCTGGAATCTAGTTACACAGACGAGAACGGAATGCCCACCGATGAATGCCTTAAGGCTCTGCAGAATGAAGAAGTCAAGGAATGTTTTCTGACAATCTGCCCGGCCCAGTGTGATCGACCATGTTTAAATGGAGGATTTTGTGCTAGCCGAAATCATTGTCAATGCCGTTCCGGTTTCCATGGTGACCAATGCGAGAAAGTTGAATGCAAGATTCTGTGTCGTAACGGTGGAACTTGTGTTGGGCCGTATAAATGTAGCTGCCCACCAGGATATGGAGGAACACAGTGTGAAAAAGCATTGTGCAGCCCGCCCTGTCAGTTTGGTGGACGATGCGTTCGACCAAACGTGTGTCACTGCTCTCCAGGATTCCTTGCGCCCTACTGTAGACCTTCTTGTAACCCAACCTGTCTTAATGGTGGAGTTTGCGTTGGACCGAACAAATGTCGCTGCCCCAAAGGCTACACGGGAAGTAACTGCTTGCAAGCGGTCTGCGGACAACCCTGTATGAACGGCGGTGTGTGTTACAAGCCTGACAAATGTACATGTCATTACGGCTGGCATGGGAAGAGGTGTGAGAAAGCGGTATGCAACCCTAAGTGTCAAAATGGCGGCACGTGTATCAGACGAAATCGATGTTCGTGTACGCGCGGGTATTCCGGCTTTTACTGTCAACACGGAGTGGTAAACAATCGTAAACAGCGAACATGA

Transcript

rna-XM_073380918.1

TAGAAACATGACTGTAAAGTCTACAAATGTGGTTGTGTACAGACTTGCAATTGAAGTTGACAGAGGCGTTGTTATTCAACGGGAGGACGATCGCTTCAGAAGTTTATCTCGTAGCTTCACGATGATTCATTCCGATCAGATGAACGCAGCCCGTACGTGCTGAGATTTTAGAATTCCTCCGAATGAATGAAAACTAATATAATGAAGTTAGTTATCGCGGCGCCAAGACTTCGGATATTTCCACAGATGTAAGCGAAACTGATTTATTGTCGCTTCCGATCGGCGAGCTGTTCTTTGGGTGTTCTTAATTGCTGCGTTTACGAGAGAAAATGGCTTGTTCCTGGCCTCGATTTAACACCGTTTTGTTACTGTCTTTACTGACAATTCCGAAGCTATCAAAGCCCTGTATTCGAATTCTACCCGAAGAGGGTGGTTGGAAGCAAATGAGCGTAGGAGAGCGTGCTAAACTTGTGAAAGTCGTTTTCATCGGAAAAGTGATCAATCTTTACACGGTAGATAAACTCTCGGGAACTTATGCCGCGGATTTTGAAATATGGAGGATTTTAAAAGGGAGAAAGATCGTGGACGAAGTCTTCGAAATGCATCGCTCTTCACTTGTCAAAGTGTATGGGTTTGGAGAGAAGAGACTGTGTTATTCGCCTGTCAAGCCGGGAGATGTTCATATGGTGTTCATGGTCTACGAACCGGCTTCTCGTTCCTTGGTGGCGCGGTACGACGATATATTCGGGGCGACAGCCGCTCCAACAGCCGCCAACGAGAACGAAGTGCTGCAGGCATTAGGTTGGAAGCCTTGGTCGAGTTGGAGTAAATGCAGCAAAAATTGCGATGGTGGGAAACAAACTCGAACGAGAGCTTGTTCTGTTAAGGAATGCGATGGAAGGACCAGACAAACGAGATCGTGCAACACTTACGAATGCGACGGTTTGAAAGACATTGTACGTCACGTTCGAGAAGAACAAACACCACCTGCCtcgaaaaatgaaaacattcaTCTGAAAAATGGACGCATGCCGTCAGTAGACGTCTCCAAAGTGTTCCGTTACTACTTTCCAGGGGAGTTCTCCATAATCATGACTTTCCGAACAACGAAGATTACAAACGTTTATCTGTTGGCGATGtattcatatggcaaaattatGACTTTAGGGGTGCGATTGACCCCAAAAATgttaagttttgaaagaaactcTCTTGTCCTTAATCATCGCTGGTCTTTGGACTTTCCTGTTGAAACACGCAAGGGACAGTGGTACAGTTTAGGTATTAGTGTCCAGAAAAAAGAAGTCACGGTCTATTGGAACTGCGAAAAGATTGGAACCAGGAGCTTTCTCGAAAGGCTCTCATTTATTCCGGACTCACTTGGTAAAATTTATCTCGGAAAACCACTGCTTGTGTCCTCTATAGAAAGTTATGAGATTGATGTTAGTGAGATGTACTTTGTCCCAGACCCCGGTGCGTCTAAACAACAGTGTGATATTCCAATTTTCAAACCAAACCTACTTCCATTTGAAGGCAGCGGAGAAGACGACGAAGGATCCGCCGGTGGTGGTACGCCAGATATTGTTGACCATCCTCAAAATGAAGTTGAAATGTCGTGGACTGAGTGGTCCAAATGCTCTCGTTCGTGCGGCAAGGGAACTAGAAAGCGAGTTATGATGTGTGACCTGGAATCTAGTTACACAGACGAGAACGGAATGCCCACCGATGAATGCCTTAAGGCTCTGCAGAATGAAGAAGTCAAGGAATGTTTTCTGACAATCTGCCCGGCCCAGTGTGATCGACCATGTTTAAATGGAGGATTTTGTGCTAGCCGAAATCATTGTCAATGCCGTTCCGGTTTCCATGGTGACCAATGCGAGAAAGTTGAATGCAAGATTCTGTGTCGTAACGGTGGAACTTGTGTTGGGCCGTATAAATGTAGCTGCCCACCAGGATATGGAGGAACACAGTGTGAAAAAGCATTGTGCAGCCCGCCCTGTCAGTTTGGTGGACGATGCGTTCGACCAAACGTGTGTCACTGCTCTCCAGGATTCCTTGCGCCCTACTGTAGACCTTCTTGTAACCCAACCTGTCTTAATGGTGGAGTTTGCGTTGGACCGAACAAATGTCGCTGCCCCAAAGGCTACACGGGAAGTAACTGCTTGCAAGCGGTCTGCGGACAACCCTGTATGAACGGCGGTGTGTGTTACAAGCCTGACAAATGTACATGTCATTACGGCTGGCATGGGAAGAGGTGTGAGAAAGCGGTATGCAACCCTAAGTGTCAAAATGGCGGCACGTGTATCAGACGAAATCGATGTTCGTGTACGCGCGGGTATTCCGGCTTTTACTGTCAACACGGAGTGGTAAACAATCGTAAACAGCGAACATGATATCACTGGTGGAGGGACGACCACTGATAAAGAATTAACGTTCTCCTCAATTTGACAATTTCCCCAACGGCCGTAAAACGTTCGTTGGACTTTTTCCCGACGTCAGGATGGATCTTAGAATAATCCAGATTAAATTATGTTTGAAGGATCAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19030 all species →	TSP1_ADAMTS	Thrombospondin type 1 domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF03146 all species →	NtA	Agrin NtA domain	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR050969 all species →	Family	Developmental Signaling Modulators	Interproscan
IPR004850 all species →	Domain	NtA (N-terminal agrin) domain	Interproscan
IPR008993 all species →	Homologous_superfamily	Tissue inhibitor of metalloproteinases-like, OB-fold	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR048287 all species →	Domain	Thrombospondin-like, N-terminal domain	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14949 all species →	EGF-LIKE-DOMAIN, MULTIPLE 7, 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0048856 all species →	Biological Process	anatomical structure development	Interproscan
GO:0043113 all species →	Biological Process	receptor clustering	Interproscan
GO:0043236 all species →	Molecular Function	laminin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_073237019.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.