Gene detail

Detailed information of XP_073239128.1 in Porites lutea

Genomic Location: chr4:37179683...37187958
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073383027.1

AAAAGGTAAGTACGGTGATAAATATTTGAGAAAACAGCCTTCTTTTCCACTGCCCTTTTAACAGGGcatacaaaaataatttcatcCCCCACCCAAAAAAGGGACATTTTTACATGTTCctggtcattttcaaaaaaaatatatgaagtTTAAGATGAGACCTAAAATCAAGTGGACGAATAGCACAAAACATCACAACAGATTGGCTTCTTCAAACCAAACAGCAAGTAATGATTTTCAGGCTGCAGGAAGATAGTGGGAGGAGGGAGGGATATATTGAGTACCCAGAAATGTCGTTGACCACAAACCATAATTCGCAGGTGATGAAGAAATACCGTTGAAAAAGAACTAACAAATCAAGAGTAGTAAAAGACCGAAATTCTTAATTCCTGTCTTCAGAAAGAAAAACCAATTTTGCTGATGAAACTTCTGTTTTGGAAGCAAAAGCTCCGAATTTAAAATCGATCTCTCCAATGAAAGAACTCacatttttcttgcttttaaaagttttaaatgtGAGGTTGGCTGGTGCACCGATCTCCAATGCTGGGCGAGTAGAAGTATTATATGCTGGTGTGTGGGGTACGATTACTGGCTGGAATTGGGATGTAAATGCTGCTAAAGTCGTATGTCGCCAGCTGGGATACCCTGGAGCTATATCATTTGGAAGCAGCAATCAGTTTGGGATCGGAAATGGACCGTCATGGTTTCAAAACGTGAGATGTCTGGGGAGTGAATCCAGTTTTGAAGAATGTTCAAAAGATACCCTGGGGTATCCGAATGGCGGCTACTCGTCAGTGGCAACGGCCATGTGTAAATCCAAACCCCAACCAGACAAAGCATCATCTGAAAATTGCTCTACTACGACGTGTTCAAGCAATGGGACATGCATAAACACCTCATTTGGTCCTATATGCAACTGTTCAGAAGGATTCACAGGTCCAAGTTGTGAAATAAGAACACTAAGCCAGTGCAAGTCTTCACCGTGTCAAAATGGCGGTCGCTGTTTTAGCGATGGCTTTTCGTATCTTTGCACATGCCCAAAAGGACTTACAGGACAACACTGCAAAGAAAGACTAGTTGTGGCCAGCAACCCGTGTCAGAGGTACCGATGCCCTGAGGACAGTGCTTGTTATCACAACGACACTGACTTTACCTGCGTATCACATGCACAAGAGGACAGCAACAGAAAGAATGCTCAATCTACCTCAACCAGCAAAAAAACAGTCCCTGAAACTTACTTCATCGTGGGCCTGTCAGTTGCCGTTGTACTTGTGTTTGTCTTTGCTGCTGTGACTGGCTGTCTGATCTTTAAAATCCGTCGGCTGACGAACAATCAGTCAAACCACTCAAGGACAGTTTTTAGTAACAGGGCGTATTGCGCTGACTTGGACAGAAAACCTGATGACGACGCGTCAATAAACGAAGTCGACCTAGGCGTGGTACTAAGTCCGGGTGGTTCGGGTCCTAAATCTTTCATCTACGAGAACCCTTCTCGCCCTCTTCCACCAGTTCCTCAAACCAGCAACACAAAGGCAGGACCACCATCTTCCTCTGCGAAGCAAACAACCCGAAGTCGTTATGACAATGGGACCAAATCAGGACAAGCTGAAAGACATTATATGGGATTGACAACTATAAACGAGAATAATACAAGACCATTTTCCCCTGAGCCAAGCAACTACATGTCTTTGTCGCCAGAGAGACCAGAAGCTGGTTCGTATGTAGCGCTTGCAACTGCTCGCCCGCAGACGCCAAGACCAGTGAAACCGCAACAGGGTAcccacaaaagaaaaagttaaggAAGAGATAGTGACACTTACGTCACGAACACACAGGGCTAATGTTAATAcgtgaaacaaacaaaccaaactaTTTTTAATTCCACAACCTGGAGGAGGTTTACAGGGTGCAACTGAAATGCTATTCAGTTTAGCATTTAGATGTAGGAAGTGTATTTGCGATAATTATTCCTTTCACTCGTAGTAAAAACATAACGTGTAGAATTCTAAACGCAAGGTATCACAAAACATTGACTGTTTTTACATTTACcaataatacaccttgtttactccccaaaattttgcgtgagaattgtttccaatttctccttgGTAGTGGCATTCGTTCCAAGAATGaaat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF00530 all species →	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR001190 all species →	Domain	SRCR domain	Interproscan
IPR050912 all species →	Family	Lysyl oxidase-like protein	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR036772 all species →	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR017448 all species →	Domain	SRCR-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45817 all species →	LYSYL OXIDASE-LIKE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004720 all species →	Molecular Function	protein-lysine 6-oxidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0018057 all species →	Biological Process	peptidyl-lysine oxidation	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_073239128.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.