Gene detail

Detailed information of XP_073239145.1 in Porites lutea

Genomic Location: chr4:37467250...37502561
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC140933478

ATGGAGCTTGAGTACATAGACTTGGAAACCACAGGAATCGCCAGCTCGGCCGGTGCTGGTATGAGCCTGAGCATGGAGCGGCATATTCAACAAACAAATGAGAGACTACAGTGCATAAAACAGCACCTTTCCACACCCCAGGGGTTTCAGACCTCAGCAAGGGAACTGCTTGAGTGGTGTGGAGATGTACGAGCCTTCCAGCGAGCTTTTGAAAGCAACTTAATGGGATGTCTTACAGTTGTGAGCCAAGTTGCAGCAAATCCTGGTTATGATTTGGATTTAGGATATAGACTGTTGGCAGTTTGTGCTGCTCACAGGGACAAGTTTACAACGAAATCAGCAACTATGTTAGGAGTCTGGTGTGAAGATCTTGGTAGACTTTTGTTGTTGCGACACCAGAAGCAAAGGAATGATACACAGAAGACAGGGGGATACCCCGCAGGGCCAGCTAACAAGCTAACACAAATGAATCAAATGAACCAAGTCAACCCGTTAAATCAGCTTCCCAACAATGATGCGTCAACTGTCATGTGGCCACAGACCACTCAAGGCCATGGTCAGCAACAGCCTTCCGTATCAGTTGTGACAACAGTATGGGGCGTCACTTCATCCATGACAAATGGAACAGCAAACATAACACATGATCCAAATAATCCTGGAATACCTACAACAAATACTGTTAACTCTGTGGGACATCCTTATCTCTCAACGTCAGCAAATCCAAAACAATATGCTCAACCAGGGGGATATCCTTCAAGACCAGGAAGCAGGCTTCCACAAGAAACAACGCCCACAGCAGCTCAATACTTCCAGCGGCAACACAGTTACCCTACTGGTGCAGGCTCCACACCGAGTGTACCCCCGGGAAGTAGCCACTACTATAACCAGCAGAGTTCAGTCCCTCCTAATGCATCCCCATTCCCACAAGCAGCAGCCAATCCTGCAGCAGCTGCAGCTGCGGCAGCAGTTGCAGCAGCTGCTGCTACAGCAACTGCAACTGCTACTGCAACAGCCACTGCTGCTCTTCAAGATCAGCAGCAAATGGGGGAGTATGGATTCTCGCCAGGACAAAACCAGTATCCTCCAAACCAAGCTAATCACCCGCAGCATCCGCCACCCCCTTATCAACGCAGTAATAGCTTCCCTCAGTATCAGCAACCCTTCACACAACAGCAGCAACCTGGAGCTCAGCAGGGAATGCAGAAAGCTGCACCTGGAATGACGCGGGCACAATACATGCAGGAGATGATGATGAGAAGGCAGCAGCAGCAACAGCAACATATGCAACAGCAGCAACAACAGCAGCAAATGCAGCAGCATTATAAAGGACAGTATCCTGGGCAGTATGGGCAGGGTGGCTATCAGGTGCCATCTTCATATCAAGCACAGGGAGGTTATCAACAACAAGGGGGACCTCCTCCTCCTTACACACCAAGTGTGAGCCCCATGTCGCAGATAAACCAGCAGATGGGACAGATGATGCAGCCAAACTCCATGAACCAGCCAGTTCCGGCGCAAATGAACCAAACAGTGGGTCCACAGATGGGTCAGATGACACCCATGGGACCAGTAAACCAGATGTCACAGATGAACCCTATGGGACAGATGCCTCAAATGTCTCAGGTCTCGCAGATGTCTTCAATGAACCCAATGTCCCCGGCAGGAATGTATGGATCTCATATGTCCCAAGCTAGGGCAGGTTCAATGTCGAGAAGACGAAAAAGCCAACTTCAGTACCAAAGCTCTCCCATGGCAAATGCCCTATCTCCTCCACTCACCCCTGTAGCGACGCCCAGCACTTACATGAGCATTAGTGACATCAGTGGTAATCCTTCTAACTGTTATGATATTAAACCCCAAATTGTTCCCAACACTGCATCGCCCCAGAGCTATGAGGACATCAAGCCTCCTAGATTAAATAACGAAACTGATGTAATTCGTTTAACCTTCCCTGTACGAGATGGAATAGTCCTTGCTCCTTTCAGACTGGAGCACAATTTAGCAGTTAGTAACCATGTGTTCCATCTTAGAGATTCAGTCCACCAAACACTGATGATGAGGCCTGATCTTGAACTTCAGTTTAAGTGTTACCATCATGAAGATAAACAGATGTACACAAATTGGCCTGCATCAGTCACTGTCAGTGTCAATGCTAATCCTCTTGGCATTGAAAGGCAAGGAGATAACAAAACATCGCACAAACCTCTTCATCTCAAGAATGTCTGTAAACCTGGTCGGAACACCATACAAATTACAGTTACTGCATGCTGCTGTTCGCACCTCTTTGTTCTTCAACTAGTCCATAGACCATCTGTAAGCTCAGTTTTACAAAGCTTACTTCGGAAACGACTTCTTCCAGCGGAACATTGTATCAATAAAATAAAAAGAAACTTCTCATTATGTTCGTCTGCTGGTGGCGCTACTGATGATAGCGTGGAGCAAACGGCTATCAAAGTTTCCTTGAAATGTCCTATAACCTTTAGAAGAATAACTCTGCCAGCCAGAGGCCATGATTGTAAACACATTCAGTGTTTTGACTTGGAATCCTACTTAAGACTCAACTGTGAGAGAGGAAGTTGGAAATGTCCGGTTTGTAGTAAAGTTGCCCTCCTGGAAGGACTGGAAGTTGATCAGTTCATGTGGGGAATCCTCACAGCTTCCAGGTGTACTGACGTAGAAGAAGTAACAATCGATCCGAACAGCCAGTGGAAACCAGTAGCGGTTAAACAAGAACCTAAAGACGAGGAGTGCCAAGGTCCGCAGCCATCGAAAAAACCCCGCCCGTCACCACCTGACTCGCTGCCACTGTCTGGTGTCAGGACACCAACATCTCAGATGTCCAGTAGCAGTGGACACTACTCGCCATACCAGACACAGCCGCCGTCTAATCCTCCTATGAGTGCACCCACTCCTCCTGGACGCACACCTCCTGAGACACACAGTTCATCTGTTGGAACTGGACAGTTACAGGAGCACAGTGCCAGTAGTGCATCAACTGCTCAGGCAGCAACACCTCATAATGCTGATAAAATGACTCCAAGTCCAGTGACCAGTCAAGCCACAACGCAAAATGCTAATCAAAGCCGAGGTCCTGCCACTCCTCAGACTCCAGGAAGTCATACAAGTCAGAAGGGGACCACGGACAGGCCACAACACCCATCAAGCCTTCCTCAGGCTCCTGGAGCTGGGAACACTGATACCACGGCGCCCGACTTGGAAAGTGATAACCTTCCAGATGAGTTTAACTTCGATGTACTGGAGAGTGACCATGGAGGAGGAACAGATGGAGTGGAAGGCGCTTTAGATGTCTTACCAGGTACCCTCGACCCAGAAGAACTTTTTAGCTACTTGACGCCGTCCGACATGCCCAGCGAAGACATTCTCTCCATGTTTGAGTAA

Transcript

rna-XM_073383044.1

GTGAATTTCTTGTGAATGGAGCTTGAGTACATAGACTTGGAAACCACAGGAATCGCCAGCTCGGCCGGTGCTGGTATGAGCCTGAGCATGGAGCGGCATATTCAACAAACAAATGAGAGACTACAGTGCATAAAACAGCACCTTTCCACACCCCAGGGGTTTCAGACCTCAGCAAGGGAACTGCTTGAGTGGTGTGGAGATGTACGAGCCTTCCAGCGAGCTTTTGAAAGCAACTTAATGGGATGTCTTACAGTTGTGAGCCAAGTTGCAGCAAATCCTGGTTATGATTTGGATTTAGgATATAGACTGTTGGCAGTTTGTGCTGCTCACAGGGACAAGTTTACAACGAAATCAGCAACTATGTTAGGAGTCTGGTGTGAAGATCTTGGTAGACTTTTGTTGTTGCGACACCAGAAGCAAAGGAATGATACACAGAAGACAGGGGGATACCCCGCAGGGCCAGCTAACAAGCTAACACAAATGAATCAAATGAACCAAGTCAACCCGTTAAATCAGCTTCCCAACAATGATGCGTCAACTGTCATGTGGCCACAGACCACTCAAGGCCATGGTCAGCAACAGCCTTCCGTATCAGTTGTGACAACAGTATGGGGCGTCACTTCATCCATGacaaatggaacagcaaacatAACACATGATCCAAATAATCCTGGAATACCTACAACAAATACTGTTAACTCTGTGGGACATCCTTATCTCTCAACGTCAGCAAATCCAAAACAATATGCTCAACCAGggGGATATCCTTCAAGACCAGGAAGCAGGCTTCCACAAGAAACAACGCCCACAGCAGCTCAATACTTCCAGCGGCAACACAGTTACCCTACTGGTGCAGGCTCCACACCGAGTGTACCCCCGGGAAGTAGCCACTACTATAACCAGCAGAGTTCAGTCCCTCCTAATGCATCCCCATTCCCACAAGCAGCAGCCAATCCTGCAGCAGCTGCAGCTGCGGCAGCAGTTGCAGCAGCTGCTGCTACAGCAACTGCAACTGCTACTGCAACAGCCACTGCTGCTCTTCAAGATCAGCAGCAAATGGGGGAGTATGGATTCTCGCCAGGACAAAACCAGTATCCTCCAAACCAAGCTAATCACCCGCAGCATCCGCCACCCCCTTATCAACGCAGTAATAGCTTCCCTCAGTATCAGCAACCCTTCACACAACAGCAGCAACCTGGAGCTCAGCAGGGAATGCAGAAAGCTGCACCTGGAATGACGCGGGCACAATACATGCAGGAGATGATGATGAGAAggcagcagcagcaacagcaacatatgcaacagcagcaacaacagcagcaaatGCAGCAGCATTATAAAGGACAGTATCCTGGGCAGTATGGGCAGGGTGGCTATCAGGTGCCATCTTCATATCAAGCACAGGGAGGTTATCAACAACAAGGGGGACCTCCTCCTCCTTACACACCAAGTGTGAGCCCCATGTCGCAGATAAACCAGCAGATGGGACAGATGATGCAGCCAAACTCCATGAACCAGCCAGTTCCGGCGCAAATGAACCAAACAGTGGGTCCACAGATGGGTCAGATGACACCCATGGGACCAGTAAACCAGATGTCACAGATGAACCCTATGGGACAGATGCCTCAAATGTCTCAGGTCTCGCAGATGTCTTCAATGAACCCAATGTCCCCGGCAGGAATGTATGGATCTCATATGTCCCAAGCTAGGGCAGGTTCAATGTCGAGAAGACGAAAAAGCCAACTTCAGTACCAAAGCTCTCCCATGGCAAATGCCCTATCTCCTCCACTCACCCCTGTAGCGACGCCCAGCACTTACATGAGCATTAGTGACATCAGTGGTAATCCTTCTAACTGTTATGATATTAAACCCCAAATTGTTCCCAACACTGCATCGCCCCAGAGCTATGAGGACATCAAGCCTCCTAGATTAAATAACGAAACTGATGTAATTCGTTTAACCTTCCCTGTACGAGATGGAATAGTCCTTGCTCCTTTCAGACTGGAGCACAATTTAGCAGTTAGTAACCATGTGTTCCATCTTAGAGATTCAGTCCACCAAACACTGATGATGAGGCCTGATCTTGAACTTCAGTTTAAGTGTTACCATCATGAAGATAAACAGATGTACACAAATTGGCCTGCATCAGTCACTGTCAGTGTCAATGCTAATCCTCTTGGCATTGAAAGGCAAGGAGATAACAAAACATCGCACAAACCTCTTCATCTCAAGAATGTCTGTAAACCTGGTCGGAACACCATACAAATTACAGTTACTGCATGCTGCTGTtcgCACCTCTTTGTTCTTCAACTAGTCCATAGACCATCTGTAAGCTCAGTTTTACAAAGCTTACTTCGGAAACGACTTCTTCCAGCGGAACATTGTATCAATAAAATAAAAAGAAACTTCTCATTATGTTCGTCTGCTGGTGGCGCTACTGATGATAGCGTGGAGCAAACGGCTATCAAAGTTTCCTTGAAATGTCCTATAACCTTTAGAAGAATAACTCTGCCAGCCAGAGGCCATGATTGTAAACACATTCAGTGTTTTGACTTGGAATCCTACTTAAGACTCAACTGTGAGAGAGGAAGTTGGAAATGTCCGGTTTGTAGTAAAGTTGCCCTCCTGGAAGGACTGGAAGTTGATCAGTTCATGTGGGGAATCCTCACAGCTTCCAGGTGTACTGACGTAGAAGAAGTAACAATCGATCCGAACAGCCAGTGGAAACCAGTAGCGGTTAAACAAGAACCTAAAGACGAGGAGTGCCAAGGTCCGCAGCCATCGAAAAAACCCCGCCCGTCACCACCTGACTCGCTGCCACTGTCTGGTGTCAGGACACCAACATCTCAGATGTCCAGTAGCAGTGGACACTACTCGCCATACCAGACACAGCCGCCGTCTAATCCTCCTATGAGTGCACCCACTCCTCCTGGACGCACACCTCCTGAGACACACAGTTCATCTGTTGGAACTGGACAGTTACAGGAGCACAGTGCCAGTAGTGCATCAACTGCTCAGGCAGCAACACCTCATAATGCTGATAAAATGACTCCAAGTCCAGTGACCAGTCAAGCCACAACGCAAAATGCTAATCAAAGCCGAGGTCCTGCCACTCCTCAGACTCCAGGAAGTCATACAAGTCAGAAGGGGACCACGGACAGGCCACAACACCCATCAAGCCTTCCTCAGGCTCCTGGAGCTGGGAACACTGATACCACGGCGCCCGACTTGGAAAGTGATAACCTTCCAGATGAGTTTAACTTCGATGTACTGGAGAGTGACCATGGAGGAGGAACAGATGGAGTGGAAGGCGCTTTAGATGTCTTACCAGGTACCCTCGACCCAGAAGAACTTTTTAGCTACTTGACGCCGTCCGACATGCCCAGCGAAGACATTCTCTCCATGTTTGAGTAATATAATATGTGGCTATTAGTCattattcaaaatattaaaGAACCATACTGattcagggttttttttactttgcttCTTGCAAGTAAAACATAGTAATATACATCTTAAAGGAATATATTTGTAGTCAGTGTATCTCCTGTATTGGGTGTCTTAGTCGCATAGCGAAGAGTTATCCGTCGTCGAATTTAGCTGTATTCACGTTAACTATTAGAAGCGTGTACTTTTGAGTAAAAaatcgccactttagaaacaacagggaaactgagctgagTTAACCTTCGCTATGACGCCTGGTACTCTTACAAGGGACGGGTGAAAAAAACAGCCAATAGCTGACTAGCGCATCTCCAGGAACAATCCCAGAAgcaattgcgggacgcatttaCGCTCCAATCCACTTTCGTTTCCAAAGTGGTGAATGCAGTTTTATTAACGATCCCTCCTCGGTTTACAGTGCCATTGTTTGACAGTTCCTTAATTTTGCTGTACCTCTTTTACGTGATGTTTTTATACATTTCGCCTTTTTAATGATGTGTTTAAGCATGAACAGGAGAAAACAGTGATCTCAGATAAGGCGTTGTTTTTATCTTGTGAGCTAACGGGACGTGTATATTGAACCGACGCAACAAAATGTATCTTAGAACAGAGCTCGTGAAACTGTGATTTATGGGTCAAACTCAGGattaatgatattattatgcaaAGGACAAATTAATTTGACTCTTGCGTTATGTGAATAATACAAAGAACGTTTTTAACCATACACAATGGTGTGTTATGGACACAAAAGAATTATGATTCCAACATTTGGAATTCGTTTAGTAAATGCTATAATATATgcataaataaattaaagattGTTACGCCTCTAACTGTAAACATTTAGTAGTATTCTGTTCTAATAGTtcttttttatcattgttattagaGGGATGTATCCGTTTTATTTCAGGTAGCGAGTCTAAAAGATGTATGAGACACAAAAGTAGTGAAGTAGTATCAAGATATTGCCAGAGTAATTTTAGTTACGTAAGAGGTGGCTAGAGACTGATTGGCTGGCCAAATGTAGTTGCGTATTGAAtgttgttatatagctggaaatttttttccaaCAGCGCGCGCTCTCACTGGTTACTTccaggtcacatgacatctaacaatgaaactgtttcccgccaaaatctcgcTTCGGGTAAtgttgcaaaatctatgacgtcagaggctagcagtgcactgttacccgcgaatgttgaccgacgaccgccgttatatcgaggtttcatGAATTTTTGGTTTCAAAATGTCCAGCTATGTAACAAATCACATAAAGACTGGTCCCGAGggaaacatttaattttgtttcgagattctcgggaaacaaaattaactgtttcccttggTACCAGTCATAAGTGTACATTGTTTTACTTTCCAGTCttctaaattaattttgtcGTCGACCAGCATACCCGTCCGCTTTATATTTTTCGCACTTTTCCATGTTCTCTTGGTAAATACATGCTTGCAGAATATACTCGACCAAAGTGTTCGCTAGGAAAATCCCGATTTGATACCAACATCCTTTTATAAAGTGGATGTAGATTATCGAATCCTTATGCAAAATCCGTTTTGGATCTCGTAATTGTTGAGAAAtctgaattggaatttgaaccTCCATATCTTGCGAGTAGGTTCAACGGATGACGCTTTTGTCGTTTGTTTCCTTGCTTCCCACAAGTTTTTCacttttgatatttattctacAGTTGTTCTTACAAAGATGTCTTtgctttcagttttatttaactccgattttttttctttcgcctatttctcttgtttttcaTCAGGcccagattttttttatatatatacaaaTCAGATCTCTCTTATATTGTTGCTTGAACACTATCCAGATTTAGAACAATTCTCCATAGTTCCTATGAAGTTTTGCTAACAACTTTGACTTAATAATTTTCGTGATGATGGTTTGCttttaagagttttttttcCCAATCTCACAGCCTTTTTTCTTGCTTTATCATTGACATTAATGAGACGACCACACGTAACAGCAAAGTAAGATTTCATGCGTGTCCCATTGTACATATTAAATGTTAGCATGTAtttatatatctctctataaaTATTGTATATCAAAGATATGATTTAGCGGCTGTAAATACATACCAGCTCTGTGTATGAAGCAAAATGGGACTTGAGCAGCGGTTAAACGCTGTAAGCTGAACCAAAATGCTTGTCAGACGACTGAATTTGTAGTGGTTCGGTGTTAAACGGTTCTCGACAATGTGGCATTAAAATCGCAAATAAGTAACCAGTTATCACATTAAACTCACTAAGAAACCAATGAAAATTTGGAAAAGCAATCGTGTCTGCTTCCTTGCCCCTAGTTAGTATGTTAGGAGAGATAAACGTAAAATATTTCAATCGCTGTTACAATTTTCATTTATATACCGTTCGTAGCAGTATCTTTCATCGTTTGTACAACGTTTGTGAATTTAGGGTTGTGTGTTACTAAGTTTAGTGAACTCGTTAAACAATGTTTCGTCGTTTCTTCTCTCCTTATATCGTGAGCAAAGTAGATTTTATACCTATTTATAACCTAATGTTTACAGCCAAAGTTAAGTAGCGAAGAACAAATTCTTACGAAGAAGGCTAAAATAGATGTAAGCCGCTTGAATGTGTAGATATTCTATATCAGTCTAAATTTTATAGGAAATAAAGATCAAGCAAGTCAAATAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02891 all species →	zf-MIZ	MIZ/SP-RING zinc finger	Domain	Interproscan
PF18028 all species →	Zmiz1_N	Zmiz1 N-terminal tetratricopeptide repeat domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004181 all species →	Domain	Zinc finger, MIZ-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR040797 all species →	Domain	Zmiz1, N-terminal tetratricopeptide repeat domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10782 all species →	ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016925 all species →	Biological Process	protein sumoylation	Interproscan
GO:0030374 all species →	Molecular Function	nuclear receptor coactivator activity	Interproscan
GO:0061665 all species →	Molecular Function	SUMO ligase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22403	ZMIZ; zinc finger MIZ domain-containing protein	-	Transcription	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.