Gene detail

Detailed information of XP_073239402.1 in Porites lutea

Genomic Location: chr4:43085097...43105613
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073383301.1

CTCAGGCACAGGCTTCTCGTCAGTTTTCCTCCGTGGTATTCCATCTTTTGATAAAGCCAAGAATGGACGAAATAAATGACAGGAGGACCAGTCTCTACGTGGGGAACTTAGATCGCCGTTGTACCGAACAGTTTATCAAGGATGTTTTTTCCAAATGCGGAAAGGTTGTACGATGCAAGATTATTAACCCGACTGGATCAACTGACCCATATTGCTTTGTGGAATTTGAAACCAGAGAATCAGCTGAACAGGCTCTATTTGCAATGAACAATCGAAATGTTTATGAGAAGCCTATCAAGGTGAACTGGGCTACCAACAACACTGGAGGCATGAGGAAAGATACGAGTAATCACTACCACGTGTTTGTGGGTGACCTTGATTCAGAGATTCATGATGAGTACCTTCATAAAGCTTTTGCTGCTTTTGGGACTGTAACGGATTGCCGTGTTGTGAAAGATACTGCTTCTGGGAAGTCTAAAGGATATGGCTTTGTGGCTTTCCTCAAAAAGGAGGATGCTGAAAAAGCTATGAGAGAGATGAaagGTGCTCAACTAAAGGGAAGATCCATTCGGACAAACTGGGCAGCTCGGAAGGCAACTCCTCAAAcaagaGTTCAGTCAAAGGAGGAAATTGCAAGACAAGCGTCGCCATATAATTCAACTGTGTATGTTGGGAACCTTCCCCCGTACTGCACAGATGATACACTTCGGCAAAATTTTTCACCGTTTGGACAAATTTATGACGTAAAATTATTCCCGGAGAAGTGTTATGGATTTATCAAGTTTTATACACATGATCAAGCTTTAGAAGCGATTTACCAAGCCCAGAAAATGGTACTAGGAGATAATTTACTGAAATGTTCCTGGGGAAAGGAAAATGCAGAAATGTCCAATACTCAGTCGGTGCAGCAGCAATGGCAACAGTACTATCAACAGTATTACCAACAGTTCTATAGCCAGCCGGGCATGGCACAGCAAGCCCAGGCTCAGCAGGGCTATATTCAGTACCCTTCACAGCCAGCTCAGTATGTTTACTATCCACAGCAGCCTTACGGAAACCAGCAAATGCAAGTTGTTCAAGCAACAATGCAAGGTTACCCCGCTCAAATGACGCCAGCATCTTCGGCTGGTCAGCAGCCTCCCACACAAACACAACAAATGATGGGAGTAGGGGGCATGATGGGACCACACCAAGGGGGTCCCGCCCCTGCCAATGCAACTTCTTACGTCATGCAGCAGGCTGCAGGCTATCCAACACAGTAGTGTCCTGTGGTTTAACAGTACACTCGAGTACCAAGTCAACCACATAGAGAATTTTTACTGTCAACGGAGTTGACGATAGACATGTCCTTTGCGCAGGTAGAGGATCGATTTAGTggcaaaaaaaagaagcaagaaGCGTTTGAAATAAGCAAAGGAATAAAGTGCTTCTGACGAAAATCAGCAAAATAATTTAAGCTAAAACTACTCCTTGGTTAGCGTTGAACCCTTTTGTGTTGAAAAAGTAGCTTAATGCTGTGTTGGCGCTGAAAGCGTTTTATTCGCAAACCTTGACGATCATACACGGATACTGTACAGTTTTAAAAagtatattttatatttattgttttcattttgttttctgaaCAAAAACCAGTGTCCAGCCTCTTCGTAATTCGAAAGTAAGTATATTTTTCATCCCATTAACGCCGTGACAGTGTCATCATCTCTGGTGTTTTGTAATATTTCTAACTTCGTAAATGGTAATCGAACTTTTTCAACATACAAAGGTCGTTAATTGCTGTAGTTTTATCGAAAAGCTTTGTATAATTCGCCGCAGTATATGTGAAGCTGTCTGGCTGGTCGTGCTGTCTTGTATCGTAAATGTAGTTCAAGTGTTTGCGTATTATAGTAACTCTAGTGCAGTTTTGTAGCTACCGAAGGTGTGTCCTTCGAACGGGAAATGATAAATGAAATGCAGGGTTACAGACGCCGAGACGTCggaaaatcaggaaaaaaaagagaaaataaagataaCTTTCACAACA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR050825 all species →	Family	RNA Recognition Motif and Poly(A) Binding Protein Families	Interproscan
IPR003954 all species →	Domain	RNA recognition motif domain, eukaryote	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47640 all species →	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_073239402.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.