Genomic Location: chr4:35550228...35553963
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families
| CDS |
| LOC140934587 |
| Transcript |
| rna-XM_073384188.1 |
| Protein |
| XP_073240289.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005361 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14815 all species → | NUDIX_4 | NUDIX domain | Domain | Interproscan |
| PF00730 all species → | HhH-GPD | HhH-GPD superfamily base excision DNA repair protein | Domain | Interproscan |
| PF00633 all species → | HHH | Helix-hairpin-helix motif | Motif | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR015797 all species → | Homologous_superfamily | NUDIX hydrolase-like domain superfamily | Interproscan |
| IPR003265 all species → | Domain | HhH-GPD domain | Interproscan |
| IPR044298 all species → | Family | Adenine/Thymine-DNA glycosylase | Interproscan |
| IPR029119 all species → | Domain | Adenine DNA glycosylase, C-terminal | Interproscan |
| IPR004036 all species → | Conserved_site | Endonuclease III-like, conserved site-2 | Interproscan |
| IPR023170 all species → | Homologous_superfamily | Helix-hairpin-helix, base-excision DNA repair, C-terminal | Interproscan |
| IPR011257 all species → | Homologous_superfamily | DNA glycosylase | Interproscan |
| IPR004035 all species → | Binding_site | Endonuclease III, iron-sulphur binding site | Interproscan |
| IPR000445 all species → | Conserved_site | Helix-hairpin-helix motif | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR42944 all species → | ADENINE DNA GLYCOSYLASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006284 all species → | Biological Process | base-excision repair | Interproscan |
| GO:0000701 all species → | Molecular Function | purine-specific mismatch base pair DNA N-glycosylase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006298 all species → | Biological Process | mismatch repair | Interproscan |
| GO:0016798 all species → | Molecular Function | hydrolase activity, acting on glycosyl bonds | Interproscan |
| GO:0032357 all species → | Molecular Function | oxidized purine DNA binding | Interproscan |
| GO:0034039 all species → | Molecular Function | 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity | Interproscan |
| GO:0035485 all species → | Molecular Function | adenine/guanine mispair binding | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03575 | mutY; A/G-specific adenine glycosylase | EC:3.2.2.31 | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Porites lutea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Porites lutea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
