Gene detail

Detailed information of XP_073240425.1 in Porites lutea

Genomic Location: chr4:45296551...45307641
NR annotation: no NCBI-NR hit recorded
Species Porites lutea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_073384324.1

atggccgccgcaAATGACTCGTCTCGAATCTCCATAAAGCAAGTATccccagaaaaaggaaaaggccTTTTTGCTAATACAAATTTCAAAGAAGGAGAAATTGTTTTTGAGGAAAAGCCATTGGTTTGCTGTCAGTTTTTGTGGAATGCTATGTACAAATACACGGCTTGTGGCTTTTGCATGAAATCTCTTGAAACAGCTGAGCAAATGGCGCGTAGGCTAACAGGAAATGCGACCTTGGAATTGCCACATGCAGCCAAGTGCTGTGAAATCGTGCGCTCAGGACAGAAAGTAGTCAACTGCCACCGCTGCCAGGTGACGTATTGCAGTGAAGAATGTCGACAGACTGCTTGGGAACAGTATCATAGAATGCTTTGCTTAGGAGAAAATCAAGGGGATCCTAGTCATCCACTTGAACAGCTGCAAGAAGCATGGAGGAAGATGCACTATCCCCCAGAAACAGCAAGTTTGATGCTCATTGCGCAGATGATTGCAAAGGTTTTGCAGGCACCAGATCCTGACAAGATGAAGAGCATATTTGAATCTTTTTGCCATTCTGTAGTCAACAAAGGACAACAGATTGTACATAAGTTATTAGGAGATAAGTTCAAGGAACAGTTAGACATCCTGAGAATGCTTTTATCTAACGCTCTCTTTGATGAGAAGTTGGAGCAGTGGTTTAAACCAGAGGGCTTTCAGTCTCTGATGGCACTTATTGGGACTAATGGACAAGGTATTGGAACAAGCTCATTGAACATCTATGTCAGTAACCTTGAAAACCTTTCTGATATATCTGAGGATGAACGACAAGCTCTAGACATATATATTGATCAACTTTACGAGGAAATGGATAAAGTTTCCGGCCAGTTTCTAAACTGTGAAGGCTCTGGATTATATGCTCTTCAAAGTTCTTGTAACCACAGTTGTGAACCAAATGCAGAGGTTACATTTCCATTCAACAACTCAACACTGGTTCTAAAGGCACTTCACAGCATTCAACCAGGAGAGGAAATTGTGATTTGTTACCTTGGAGAGTGTGACAGAGACAGAAGTCGTCATTCAAGACAACGATTACTCAGagaaAATTACCTGTTTACCTGCACTTGTCCAAAATGTGAATCTGAAGCTGGCCATCCAGACGTCACGTCAAGCGAAGATGAAGACGATTCAATGGAAGAAGACGCCTAATCGCAGACATGCTCGCCATTGATGTCATCGATCACTCGTGGTGTTAATTCGCCTTCGCACCTGTTTCGCATCGCATTTCATACAGTATAACCGTAATACGGTGGCAATCTTCTCCTGCTCAAACAGATGCAAACACGAATTAATCAGGAGAACATAGGAAGGTTGAACAGCCTCCCCGGGGAGCCAACCTCTTCGCCTACGGGGAGCTGGTATCGTTCAACACGCTCCGAGTCATGCGTAACGAAAGAGAAAACCATTCCACAGTGACTGCTAGTGTGGGACTGCTCACGGGCAAATCCAAACACCAAAACAACATTGAGGCTAACCCTGAGCTTCATTTGTTCGCGTTCAGTGACCTTCAATCTCTTACctctgtatttcttttttttgttcaatgACCAGTTATCCCTTGTAAATTGTAATGTTTCGCGCGATCACTTATCGTGTCAAGTACTcagtttcttttcttccttttcttacATGTATGTCACTGGATGACCAGCTAAAGATTTTTGAGGCTCTCAAAGCATATAACTAAAAGATTTTTACCGTAACCACTTTACTAATAACGGCCGTTTTTCCTGGTTTGTTttagttgtttgtttgttctgttTAGACCAATTTCATCCAAATCACTATATTACAggttaggcccggttcaaacgccgaatttttcatgagccgaacctaatacattgaattaaataaatgaaGAGTTCGGCGTCtgatcaattaggaacgcctattTCAATTGGAACGGTTCAGCCGTTCTTCCCGCGTAGCCCTGCCGGGAATTTCGACTGTTgacgactttggaacggctttgattgagacgctgaacttttcatgtgcctAACCTATAATGCTTAAATTATAATAacgtattttgcaagcagtttgaccaaaatgaccatttttctccttttgaattcagttcggctggaattaagatcggcgtctaaATCAATTCAGCTAGTCTGAATagtttgggtcggccttaattcgaagcaggttcggctcatgaaaagatcAGTGTCTGAACCGCACCTTGTAGCTTAATCCAAAACCAATCGTCACTTATTCGCTCACTTGTTTCCTTGGGCTTGGCCCCGGTAAATCGCGTTTTGCTGACAAATTCATTGATTGTCCCAAATTATCACCGAAAATGCTCTGTTAGTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856 all species →	SET	SET domain	Family	Interproscan
PF01753 all species →	zf-MYND	MYND finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214 all species →	Domain	SET domain	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR044422 all species →	Domain	SMYD5, SET domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46402 all species →	SET AND MYND DOMAIN-CONTAINING PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0042799 all species →	Molecular Function	histone H4K20 methyltransferase activity	Interproscan
GO:0045814 all species →	Biological Process	negative regulation of gene expression, epigenetic	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24635	SMYD5, ZMYND23; SET and MYND domain-containing protein 5	EC:2.1.1.-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.